RNA id: TU20402


Basic Information

Item Value
RNA id TU20402
length 842
RNA type TUCP
GC content 0.40
exon number 3
gene id G15173
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7398101 ~ 7399141 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aacggTCTTAAAGGAGGTAAAAGAGGGACTCAGACTGCCCAAAGAGACGCCCAATGACCAATCAGaatggtctgtgtgtgtctttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtctctgtgtgtttaaaaaaatatagaacGTAAAATTTTCTAGAGGAAGGACCCCTAACCCTTCCACTCTGATCTATATCTCTGACACGCCTGTATCTACACCCAgctgcattgtgggtaatgtctCTACAGCTCTGGCGCCTGCTGCTGCGAGTCCTGTCTCAGGTGGGGCAGCACGGCGTCTCTGTAGAACGTCTCCAGCTTGGACAGCGTGGCGTCCCACAGGgcggggtcaaaggtcacgggGACGATGGCGAGCTCCTTCAGCGTGAACACGGCGAGGTCAGCGTCACGCAGCCCCGTCACCGCCAGCTGCACCTGGATCTGGGTGTAGTAGCTGTGGGACGTCTTCAGACGGTACGCCGGGGGGGACGCCGCCGGGGGCTGGGAcaggaagagacagacaggatgttagagagagacagctatttgaaggtgctgtaggtagggtTGTGtacctgattggtgcatctgaacagttatacaccccctttggccctgattggtgcatctgaacagttagacactccccctggccctgattggtgcatctgaacagttagtacacctcccctggccctgattggtgcatctgaacagttagacactccctttggccctgattggtgcatctgaacagttagacactccctttggccctgattggtgcatctgaacagttagacactccctttggccctgattggtgcatctgaacagtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20399 lncRNA upstream 5791 7391413 ~ 7392310 (+) True G15171
TU20400 lncRNA upstream 5791 7391413 ~ 7392310 (+) False G15171
XR_005636456.1 lncRNA upstream 9419 7382638 ~ 7388682 (+) True LOC120544109
TU20381 lncRNA upstream 36892 7326575 ~ 7361209 (+) True G15156
TU20388 lncRNA upstream 41544 7354998 ~ 7356557 (+) True G15162
TU20404 lncRNA downstream 1624 7400765 ~ 7402776 (+) True G15174
TU20411 lncRNA downstream 26299 7425440 ~ 7459538 (+) True G15179
TU20412 lncRNA downstream 26299 7425440 ~ 7450207 (+) False G15179
TU20490 lncRNA downstream 95919 7495060 ~ 7541926 (+) True G15236
TU20529 lncRNA downstream 268001 7667142 ~ 7745991 (+) True G15243
XM_039780137.1 mRNA upstream 1467 7365796 ~ 7396634 (+) True LOC120545619
XM_039777245.1 mRNA upstream 456667 6935046 ~ 6941434 (+) True or55e1
XM_039776759.1 mRNA upstream 468516 6913684 ~ 6929585 (+) True LOC120543617
XM_039780036.1 mRNA upstream 486611 6910543 ~ 6911490 (+) True LOC120545568
XM_039779950.1 mRNA upstream 498519 6898638 ~ 6899582 (+) True LOC120545541
XM_039777404.1 mRNA downstream 31802 7430943 ~ 7440995 (+) False LOC120543955
XM_039777395.1 mRNA downstream 31862 7431003 ~ 7440997 (+) True LOC120543955
XM_039776913.1 mRNA downstream 135958 7535099 ~ 7570718 (+) True ece2b
XM_039776922.1 mRNA downstream 151624 7550765 ~ 7570718 (+) False ece2b
XM_039776845.1 mRNA downstream 174583 7573724 ~ 7603726 (+) False ano7
TU20165 other upstream 408705 6972845 ~ 6989396 (+) True G15019
TU19929 other upstream 982031 6414587 ~ 6416070 (+) False spcs2
TU19934 other upstream 982557 6414587 ~ 6415544 (+) False spcs2
TU19935 other upstream 982557 6414587 ~ 6415544 (+) False spcs2
TU19963 other upstream 984726 6408043 ~ 6413375 (+) False spcs2
unassigned_transcript_83 other downstream 12689 7411830 ~ 7411912 (+) True trnal-cag
TU20486 other downstream 92224 7491365 ~ 7492057 (+) True G15234
TU20573 other downstream 427469 7826610 ~ 7827290 (+) False LOC120543808
TU20559 other downstream 434182 7833323 ~ 7843657 (+) False rffl
TU20560 other downstream 434337 7833478 ~ 7843657 (+) False rffl

Expression Profile