RNA id: TU20412


Basic Information

Item Value
RNA id TU20412
length 354
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G15179
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7425440 ~ 7459538 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTCTCAAACATGaattctttatctcatcatcagaggaaactttgtagcatcagctctctatccagtaatcaatgtcctcTACAGGACTctagatgacacacacacacacacacacacacactcatacacaaacacacagagacacacacagacacacacacagacacacacacacgcactcacacaaacatacacacacacacacacacacacacacacacacagacacacacacacacacactcaaacacacatacacacacacacacacacaaacacacacacacacacacacacacaaacacacagacacacacagacacacacacacacaaacacacacacacacagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20404 lncRNA upstream 22664 7400765 ~ 7402776 (+) True G15174
TU20399 lncRNA upstream 33130 7391413 ~ 7392310 (+) True G15171
TU20400 lncRNA upstream 33130 7391413 ~ 7392310 (+) False G15171
XR_005636456.1 lncRNA upstream 36758 7382638 ~ 7388682 (+) True LOC120544109
TU20388 lncRNA upstream 68883 7354998 ~ 7356557 (+) True G15162
TU20490 lncRNA downstream 44853 7495060 ~ 7541926 (+) True G15236
TU20529 lncRNA downstream 216935 7667142 ~ 7745991 (+) True G15243
TU20554 lncRNA downstream 329050 7779257 ~ 7800890 (+) True G15262
TU20570 lncRNA downstream 333561 7783768 ~ 7839409 (+) True G15267
TU20572 lncRNA downstream 348630 7798837 ~ 7870287 (+) True G15269
XM_039780137.1 mRNA upstream 28806 7365796 ~ 7396634 (+) True LOC120545619
XM_039777245.1 mRNA upstream 484006 6935046 ~ 6941434 (+) True or55e1
XM_039776759.1 mRNA upstream 495855 6913684 ~ 6929585 (+) True LOC120543617
XM_039780036.1 mRNA upstream 513950 6910543 ~ 6911490 (+) True LOC120545568
XM_039779950.1 mRNA upstream 525858 6898638 ~ 6899582 (+) True LOC120545541
XM_039776913.1 mRNA downstream 84892 7535099 ~ 7570718 (+) True ece2b
XM_039776922.1 mRNA downstream 100558 7550765 ~ 7570718 (+) False ece2b
XM_039776845.1 mRNA downstream 123517 7573724 ~ 7603726 (+) False ano7
XM_039776830.1 mRNA downstream 123523 7573730 ~ 7603726 (+) True ano7
XM_039776858.1 mRNA downstream 123523 7573730 ~ 7601618 (+) False ano7
unassigned_transcript_83 other upstream 13528 7411830 ~ 7411912 (+) True trnal-cag
TU20402 other upstream 26299 7398101 ~ 7399141 (+) True G15173
TU20165 other upstream 436044 6972845 ~ 6989396 (+) True G15019
TU19934 other upstream 1009896 6414587 ~ 6415544 (+) False spcs2
TU20486 other downstream 41158 7491365 ~ 7492057 (+) True G15234
TU20573 other downstream 376403 7826610 ~ 7827290 (+) False LOC120543808
TU20559 other downstream 383116 7833323 ~ 7843657 (+) False rffl
TU20560 other downstream 383271 7833478 ~ 7843657 (+) False rffl
TU20561 other downstream 385842 7836049 ~ 7843657 (+) False rffl

Expression Profile