RNA id: TU20478


Basic Information

Item Value
RNA id TU20478
length 487
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G15227
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7446701 ~ 7459539 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtctgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtctgtgtgtgtttgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtttgtgtgtgtttgtgtgtgtttgtgtttgtgtttgtgtctgtgtgtgtgtgcgtttgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtatgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtttgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20461 lncRNA downstream 27654 7345658 ~ 7419047 (-) True G15211
TU20463 lncRNA downstream 90193 7354804 ~ 7356508 (-) True G15212
TU20459 lncRNA downstream 115781 7327696 ~ 7330920 (-) True G15209
XR_005636458.1 lncRNA downstream 235335 7207740 ~ 7211366 (-) True LOC120544114
XR_005636457.1 lncRNA downstream 237973 7207740 ~ 7208728 (-) False LOC120544114
TU20487 lncRNA upstream 31847 7491386 ~ 7492016 (-) True G15235
TU20607 lncRNA upstream 38486 7498025 ~ 7498806 (-) True G15300
TU20608 lncRNA upstream 46408 7505947 ~ 7572179 (-) True G15301
TU20627 lncRNA upstream 110443 7569982 ~ 7637023 (-) True G15316
TU20632 lncRNA upstream 110443 7569982 ~ 7592732 (-) False G15316
XM_039777175.1 mRNA downstream 34194 7398193 ~ 7412507 (-) False LOC120543849
XM_039777167.1 mRNA downstream 35054 7398193 ~ 7411647 (-) True LOC120543849
XM_039780074.1 mRNA downstream 102808 7320761 ~ 7343893 (-) False lrch3
XM_039777541.1 mRNA downstream 178987 7262974 ~ 7267714 (-) True LOC120544032
XM_039776743.1 mRNA downstream 247162 7142729 ~ 7199539 (-) True LOC120543599
XM_039777416.1 mRNA upstream 35494 7495033 ~ 7509145 (-) True polr2d
XM_039788182.1 mRNA upstream 253113 7712652 ~ 7715037 (-) True LOC120551046
XM_039788203.1 mRNA upstream 523555 7983094 ~ 7986427 (-) True LOC120551059
XM_039776786.1 mRNA upstream 563089 8022628 ~ 8063341 (-) False LOC120543635
XM_039776779.1 mRNA upstream 567866 8027405 ~ 8063338 (-) True LOC120543635
TU20455 other downstream 106093 7309914 ~ 7340608 (-) True lrch3
TU20443 other downstream 238410 7207735 ~ 7208291 (-) False LOC120544114
TU20310 other downstream 310597 7129626 ~ 7136104 (-) True rpl35a
TU20329 other downstream 326660 7114719 ~ 7120041 (-) False LOC120543742
TU20324 other downstream 333093 7111699 ~ 7113608 (-) True G15114
unassigned_transcript_84 other upstream 50461 7510000 ~ 7510071 (-) True trnag-ucc
unassigned_transcript_85 other upstream 476717 7936256 ~ 7936327 (-) True trnaa-cgc
TU20786 other upstream 677762 8137301 ~ 8140775 (-) False LOC120551075
TU21348 other upstream 1008818 8468357 ~ 8469760 (-) True G15757
TU21363 other upstream 1142533 8602072 ~ 8602890 (-) True G15771

Expression Profile