RNA id: TU20561


Basic Information

Item Value
RNA id TU20561
length 1670
RNA type TUCP
GC content 0.49
exon number 4
gene id rffl
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7806809 ~ 7853429 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCTGCAGTAACTGGCTGTGTGTGCAGTATTTAACCCTGgttacagtgtgtatttgtgtgtactcCAGGTATGTTTGCGTCCTGCAGTAACTGGCTGTGTGTGCAGTATTTAACCCTCgttacagtgtgtatttgtgtgtactcCAGGTATGTTTGCGTCCTGCTGTAACTGgctgtgtgtgtagtatttAACCCTGgttacagtgtgtatttgtgtgtactcCAGGTATGTGTGCGTCCTGCTGTAACTGGCTGTGTGTGCAGTATTTAACCCTGgttacagtgtgtatttgtgtgtactcCAGGTATGTGTGCGTCCTGCTGTAACTGGCTGTGTGTGCAGTATTTAACCCTGgttacagtgtgtatttgtgtgtactcCAGGTATGTGTGCGTCCTGCAGTAACTGGCTGTGTGTGCAGTATTTAACCCTGgttacagtgtgtatttgtgtgtactcCAGGTATGTGTGCGTCCTGCTGTAACTGGCTGTGTGTGCAGTATTTAACCCTGgttacagtgtgtatttgtgtgtactcCAGGTATGTTTGCGTCCTGCTGTAACTGGCTGTGTGTGCAGTATTTAACCCTGgttacagtgtgtatttgtgtgtactcCAGGTATGTTTGCGTCCTGCTGTAACTGGCTGTGTGTGCAGTATTTAACCCTCgttacagtgtgtatttgtgtgtactcCAGGTATGTTTGCGTCCTGCTGTAACTGGCTGTGCGTGCAGTATTTAACCCTCgttacagtgtgtatttgtgtgtactcCAGGTATGTTTGCGTCCTGCTGTAACTGGCTGTGCGTGCAGTATTTAACCCTGgttacagtgtgtatttgtgtgtactcCAGGTATGTTTCGTCCTGCTGTAATCTGGCTGTGCGGGCAGTATTTAACCCTTGtacagtgtgtatttgtgtgtactcCAGGTATGTTTGCGTCCTGCTGTAACTGGCTGTGTGTGCAGTATTTAACCCTGgttacagtgtgtatttgtgtgtactcCAGGTATGTTTGCGTCCTGCTGTAACTGGCTGTGCGTGCAGTATTTAACCCTGgttacagtgtgtatttgtgtgtactcCAGGTATGTTTGCGTCCTGCTGTAACTGGCTGTGCGTGCAGTATTTAACCCTGgttacagtgtgtatttgtgtgtactcCAGGTATGTTTGCGTCCTGCTGTAACTGGCTGTGCATGGACTCAGGTGAGGTGGGGGGACAGTCTGCAGCGGAGAGACGCCATCAGTCCTACACCAACTCTGGCTTCAACAGCCAGCCGTCTCCGTCAGGGTCTCCGTCTGAACCGTCCTGTAAGGCGTGCGGGGGCCGCCTGGACACCCCGGCTACCAAGcatgtgtgtgtggactgtAAGAAGGACTACTGCAGCCTCTGCTCGGCCCAGCTGGAGCTCCGCCCCCGGCTTTGTCACACCTGCCAGCGTTTCTACGGCAACCTGCTGGAGCGGGCCGAGCTGATGAAGCTGAAGGTGAAGGAGCTCCGGGACTACCTGCACCTCCACGAGGTCTCCACACACCTCTGTAGAGagaagGAGGAGCTGGTGGAGCTGGTCCTGGGTCAGCAGTCTTCTCCGTCCAGTGACTCCGCCCCCGAGACCCTGACCCCCCTGGACCCCCCCACTGTGACCCCTCCCATCTTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20569 lncRNA upstream 131 7835175 ~ 7835918 (+) True G15266
TU20554 lncRNA upstream 35159 7779257 ~ 7800890 (+) True G15262
TU20529 lncRNA upstream 90058 7667142 ~ 7745991 (+) True G15243
TU20490 lncRNA upstream 294123 7495060 ~ 7541926 (+) True G15236
TU20411 lncRNA upstream 376511 7425440 ~ 7459538 (+) True G15179
TU20557 lncRNA downstream 4087 7847744 ~ 7853429 (+) True rffl
TU20566 lncRNA downstream 9870 7853527 ~ 7857191 (+) True G15265
TU20578 lncRNA downstream 28759 7872416 ~ 7900015 (+) True G15275
TU20556 lncRNA downstream 38545 7882202 ~ 7892473 (+) False LOC120543711
TU20579 lncRNA downstream 41405 7885062 ~ 7885695 (+) False G15276
XM_039777073.1 mRNA upstream 7962 7826643 ~ 7828087 (+) True LOC120543808
XM_039776795.1 mRNA upstream 144977 7679029 ~ 7691072 (+) True LOC120543651
XM_039777343.1 mRNA upstream 179130 7642554 ~ 7656919 (+) False eif4h
XM_039776883.1 mRNA downstream 14396 7858053 ~ 7886305 (+) True LOC120543711
XM_039788213.1 mRNA downstream 271728 8115385 ~ 8118646 (+) True LOC120551067
XM_039777293.1 mRNA downstream 279968 8123625 ~ 8125669 (+) True LOC120543907
XM_039788241.1 mRNA downstream 400974 8244631 ~ 8307210 (+) True LOC120551081
XM_039776949.1 mRNA downstream 555743 8399400 ~ 8422336 (+) True nyap2a
TU20573 other upstream 8759 7826610 ~ 7827290 (+) False LOC120543808
TU20486 other upstream 343992 7491365 ~ 7492057 (+) True G15234
unassigned_transcript_83 other upstream 424137 7411830 ~ 7411912 (+) True trnal-cag
TU20402 other upstream 436908 7398101 ~ 7399141 (+) True G15173
TU20165 other upstream 846653 6972845 ~ 6989396 (+) True G15019
TU20798 other downstream 327039 8170696 ~ 8172491 (+) True G15415
TU20801 other downstream 327039 8170696 ~ 8171775 (+) False G15415
XR_005636425.1 other downstream 952413 8796070 ~ 8808829 (+) False LOC120544007
XR_005636426.1 other downstream 952413 8796070 ~ 8808770 (+) True LOC120544007
XR_005636424.1 other downstream 952427 8796084 ~ 8808829 (+) False LOC120544007

Expression Profile