RNA id: TU20573


Basic Information

Item Value
RNA id TU20573
length 597
RNA type TUCP
GC content 0.54
exon number 2
gene id LOC120543808
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7826610 ~ 7828087 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctgagtggtgtcagtgtttgtccacctcggagcagaatggctgcagtcacagagctctccttcctgctgtttgctctcatcaacaACATCCATGCACAAGAACAGGTCATCGTCAAACAGGAAGGAGACTCTTACACCTTCAACCTCCCCGAGAACACCaactcctgcctgatctccagatctgttggtgaggagaagcttgtcctgtggaacacctctgacctctggtccaacaaCCCCTCAGTACCTGAATACCTGAAACAACGACTTGTCAGGACAGCGGATacttcttcttacaccatcctcaacctgacccattcagactACGGCCGGTAccgagaggagtgttggactgagggcaacGTGACGCATGAAAACAACTttactattactgtttgtacttCAATAGACGAGAGATATGGGAGAGATATCAGAGTGAGACTTGGAGAAACAGTGGACGTGCCATGTGAGGGAGCAGCTGATAATCTGGATATCCAGTGGCTCAAACGGGACTATAGATATGAGCAACTTACATTGAGCAGAGTTTTTGGGGACAAGAcgacatcagtgatggacaatgttagaggaagatacca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20554 lncRNA upstream 25720 7779257 ~ 7800890 (+) True G15262
TU20529 lncRNA upstream 80619 7667142 ~ 7745991 (+) True G15243
TU20490 lncRNA upstream 284684 7495060 ~ 7541926 (+) True G15236
TU20411 lncRNA upstream 367072 7425440 ~ 7459538 (+) True G15179
TU20412 lncRNA upstream 376403 7425440 ~ 7450207 (+) False G15179
TU20569 lncRNA downstream 7885 7835175 ~ 7835918 (+) True G15266
TU20576 lncRNA downstream 12179 7839469 ~ 7839994 (+) True G15273
TU20557 lncRNA downstream 20454 7847744 ~ 7853429 (+) True rffl
TU20566 lncRNA downstream 26237 7853527 ~ 7857191 (+) True G15265
TU20578 lncRNA downstream 45126 7872416 ~ 7900015 (+) True G15275
XM_039776795.1 mRNA upstream 135538 7679029 ~ 7691072 (+) True LOC120543651
XM_039777321.1 mRNA upstream 161460 7642554 ~ 7665150 (+) True eif4h
XM_039777314.1 mRNA upstream 161460 7642554 ~ 7665150 (+) False eif4h
XM_039777304.1 mRNA upstream 169691 7642554 ~ 7656919 (+) False eif4h
XM_039777343.1 mRNA upstream 169691 7642554 ~ 7656919 (+) False eif4h
XM_039777204.1 mRNA downstream 6132 7833422 ~ 7850979 (+) False rffl
XM_039777214.1 mRNA downstream 6132 7833422 ~ 7850979 (+) False rffl
XM_039777223.1 mRNA downstream 6132 7833422 ~ 7846884 (+) False rffl
XM_039776883.1 mRNA downstream 30763 7858053 ~ 7886305 (+) True LOC120543711
XM_039788213.1 mRNA downstream 288095 8115385 ~ 8118646 (+) True LOC120551067
TU20486 other upstream 334553 7491365 ~ 7492057 (+) True G15234
unassigned_transcript_83 other upstream 414698 7411830 ~ 7411912 (+) True trnal-cag
TU20402 other upstream 427469 7398101 ~ 7399141 (+) True G15173
TU20165 other upstream 837214 6972845 ~ 6989396 (+) True G15019
TU19934 other upstream 1411066 6414587 ~ 6415544 (+) False spcs2
TU20559 other downstream 6033 7833323 ~ 7843657 (+) False rffl
TU20560 other downstream 6188 7833478 ~ 7843657 (+) False rffl
TU20561 other downstream 8759 7836049 ~ 7843657 (+) False rffl
TU20798 other downstream 343406 8170696 ~ 8172491 (+) True G15415
TU20801 other downstream 343406 8170696 ~ 8171775 (+) False G15415

Expression Profile