RNA id: TU20627


Basic Information

Item Value
RNA id TU20627
length 2186
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G15316
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7569982 ~ 7637023 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgcagGGTGGGTTTTGCCCGCTGTAGTTGCGTGGTGATGTTGCCAGGGTGAAGTTGATGAAGCCGCTGAGTGTGCTGTCTCTTGTGTAGCCGTAGTACAGGCGAGGCAGGAAGGACGACGTGAACGCTATGAGGAATgcctggaaacacacacacgcacacgcacacacacacacacacacacacacacacacacacacacacacacacacaaaacatctttGGCAGGAAGCAGCTTCTTCTGCTGAACAAATGACGACACACACAGGAGCTGCACGGGATTGGACAGCAGTGGCTTcaggaggagacacacacacactcatgctcaCTCCCTCACACGATCACATGCTcactcgctcacacacacgctCGCACACACACTCGCGCACACACGCCACAGTGATGTCAGAGAGTGCGTTCattcaacaaacacacaaacgacCCAAGGcccattaatattaataacaataacaataataacggTGATAAAGCAGAAATCAGTGACATTGTCCCATagcttcatcttcatcatcggTCCTTCGTGTCTCTGTGAAGTCCACTGAGTCCGTTTAGTTTAGTTtccagacaggaagtcagtctGATCGTCTCCACCGAACAACGTTAATAAACCTGCAACATCCCATAATAACCTCCATATAAACTCCTCTAAGTAAGACACTAACCAGCCGGCTAAGCAAGGAACATTTCTGTCCGGTAACAGTCTGACTAAACGACAGGCAGGTTTCCAACCTGACACCCAGAGCGGTTTCTTAAAAGGAGACCTGTTATAAACAGTTTCCAGCTTCATACGTAGCTTGTGTTTCTTCTTGAACATGTTTAGGGGCAGAGACAGAAGATGTAAACATTAAAAGGCTCTGCCCACAGCTAGGCAGAGATATATGAACTGTTGTTTAAGTCAATCACAGATCATCTAaaaatctgtacatcatttggAAAAAACATGTTGTCGAAGAAAAGATTAATCCTGTATACAGACGACATCCTGTTTAATATCTAAAAAACATGTTGGCGAAAAAAAGATTCATCTTGTATACAGACGACATCCTGGTTTATATCTAAAAACATGTTGGCGAAAAAAAGATTCATCCTGTATACAGACGACATCCTGTTTTATATCTAAAAACATGTTGGCGAAAAAAAGATTCATCCTGTATACAGACGACATcctgttttatatttaaaaacatgttggcAAAAAAAAGAGTCATCCTGTATACAGACAACATCCTGTTTTATATCTCACTGCTTttttgagtttaggaaaagaacaacggggttggctttaggaaacgtgacacgcgggacatgatctgcggtctcctgggtgaaagtcctgtgtttgacccgtCCTCCActccgaccaacctccctacgcagattttcaccctttcatactactctctacggcgtcaattcacacgcaattgcaaggtaatgtaagtcaatggaggccaaacagcaTTGAttaacacgctaaaaagcaagtatgtgtcttgataacacggcaataatggcatacgaattggagtgtcatacatacgccatttCATGAGATCCGTCTGAACTATGAGGTTTTGgctcacagggatttctttTAAATACGTTTACGtcattatttgaagctttggTGTTTTAATGTTTGACACAAACATCCGAGATTGTAACATTACAGAAACACTAATATAAGAAAtatctgtgtaataacagttgTATGACTGTATATTTAACtagaaaaaactttaaaaaaaaggtgacaaatgtaaaaaaaaaaaagcttcaaaaagtgagcgagaaaaaaaaaagtgacaaaaacattgcctAAAATTCACAGGGATTTGAAGCTGTGGCGTTTTAATGTTTAACATCTGAGATTGTAACATAgatatgaaagaaaaaacagaaacttgTAACAGGTCTCCTTTAACAGACTGAGCGAATAGGCCCAACCCCGTCCCCCCCCTGCGATTGGCCGGTGTGTCTACCAGACCTCGCAGCGCTGCCCTGTGTTCATTGGCGTCCCCTCGGGACAGTTGAAGTGGCGGCTGAAGTCTGGAGAGTTGGCGAGTGTGCCGATGACTCGGTACCGCGGCGGGCTGTGGGGGTCGGTCATCAGACCCTCGTGGGCGCTCTCGGGGGTCCGGACAGAACACCACACCTGgaaaacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20607 lncRNA downstream 71176 7498025 ~ 7498806 (-) True G15300
TU20487 lncRNA downstream 77966 7491386 ~ 7492016 (-) True G15235
TU20477 lncRNA downstream 108192 7446158 ~ 7461790 (-) True G15226
TU20478 lncRNA downstream 110443 7446701 ~ 7459539 (-) True G15227
TU20463 lncRNA downstream 213474 7354804 ~ 7356508 (-) True G15212
TU20645 lncRNA upstream 5598 7642621 ~ 7651108 (-) False G15325
TU20644 lncRNA upstream 8195 7645218 ~ 7658962 (-) True G15325
TU20651 lncRNA upstream 30174 7667197 ~ 7745661 (-) True G15330
TU20653 lncRNA upstream 45703 7682726 ~ 7708677 (-) True G15332
TU20677 lncRNA upstream 137418 7774441 ~ 7885902 (-) False G15339
XM_039777416.1 mRNA downstream 60837 7495033 ~ 7509145 (-) True polr2d
XM_039777175.1 mRNA downstream 157475 7398193 ~ 7412507 (-) False LOC120543849
XM_039777167.1 mRNA downstream 158335 7398193 ~ 7411647 (-) True LOC120543849
XM_039780074.1 mRNA downstream 226089 7320761 ~ 7343893 (-) False lrch3
XM_039777541.1 mRNA downstream 302268 7262974 ~ 7267714 (-) True LOC120544032
XM_039788182.1 mRNA upstream 75629 7712652 ~ 7715037 (-) True LOC120551046
XM_039788203.1 mRNA upstream 346071 7983094 ~ 7986427 (-) True LOC120551059
XM_039776786.1 mRNA upstream 385605 8022628 ~ 8063341 (-) False LOC120543635
XM_039776779.1 mRNA upstream 390382 8027405 ~ 8063338 (-) True LOC120543635
XM_039777191.1 mRNA upstream 442201 8079224 ~ 8098464 (-) True LOC120543856
unassigned_transcript_84 other downstream 59911 7510000 ~ 7510071 (-) True trnag-ucc
TU20455 other downstream 229374 7309914 ~ 7340608 (-) True lrch3
TU20443 other downstream 361691 7207735 ~ 7208291 (-) False LOC120544114
TU20310 other downstream 433878 7129626 ~ 7136104 (-) True rpl35a
TU20329 other downstream 449941 7114719 ~ 7120041 (-) False LOC120543742
unassigned_transcript_85 other upstream 299233 7936256 ~ 7936327 (-) True trnaa-cgc
TU20786 other upstream 500278 8137301 ~ 8140775 (-) False LOC120551075
TU21348 other upstream 831334 8468357 ~ 8469760 (-) True G15757
TU21363 other upstream 965049 8602072 ~ 8602890 (-) True G15771
XR_005638459.1 other upstream 1217289 8854312 ~ 8854592 (-) True LOC120554466

Expression Profile