RNA id: TU20653


Basic Information

Item Value
RNA id TU20653
length 860
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G15332
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7682726 ~ 7708677 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atccagaactgtagcagtgatccagaagAAGATTGGGATGTGACACATGATGTAGAGGCTTCGTGATgacttgatgtgggagatgattctgctggtCTGCTCCTCATTTGTGAATCTTTTCTTGAAGTACTCTTCCTTCTGTGGttcagtgaaccctctgacctctgtcaccatgtcaacacagAAGGGATCTGAtcggctgctgcaggtcgtgtggttatccagaggcgagcagagggaagcagtttccccctgatgaggtttgtcagcagcacatccactgaggtggactctgtcacatcagtcaggatctcagtgttgaggaagtctagaggaagtcgacactcatccagaccatcaaagatgaacacaaccaggaactcttcaaacctgtagattcctgcttctttggtttcactaaagaacaaatgaacaagttgcaccaagctgtactttttctctttcaacacattcagctctctgaaggtgaatgtaaatgtgaactggatgtcctggttggctttgccttcagcccagtccagagtgaacttttgtgttaagactgttttcccgatgccagccactccgtttgtcatcactgttctgattggttcatctcttccaggtggagttttaaagatgtcttcacatatgattgttgtttctggtctgtctggtttcctggatgctgtttcaatctgtctgacctcatgttcaaCATTGACCTCTTCAGTCTCTCCCTttgtgatgtagatctctgcgaacatctgattcagaaaggttttgtttccagctttagcaatcccctcaaacacacactggaacttcttTCGTGAGTTGGATTTGACTTGTTGCTGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20644 lncRNA downstream 23764 7645218 ~ 7658962 (-) True G15325
TU20645 lncRNA downstream 31618 7642621 ~ 7651108 (-) False G15325
TU20627 lncRNA downstream 45703 7569982 ~ 7637023 (-) True G15316
TU20632 lncRNA downstream 89994 7569982 ~ 7592732 (-) False G15316
TU20608 lncRNA downstream 110547 7505947 ~ 7572179 (-) True G15301
TU20677 lncRNA upstream 65764 7774441 ~ 7885902 (-) False G15339
TU20685 lncRNA upstream 75083 7783760 ~ 7885723 (-) False G15339
TU20669 lncRNA upstream 90200 7798877 ~ 7799459 (-) False G15339
TU20671 lncRNA upstream 90200 7798877 ~ 7840118 (-) False G15339
TU20670 lncRNA upstream 91622 7800299 ~ 7870281 (-) False G15339
XM_039777416.1 mRNA downstream 173581 7495033 ~ 7509145 (-) True polr2d
XM_039777175.1 mRNA downstream 270219 7398193 ~ 7412507 (-) False LOC120543849
XM_039777167.1 mRNA downstream 271079 7398193 ~ 7411647 (-) True LOC120543849
XM_039780074.1 mRNA downstream 338833 7320761 ~ 7343893 (-) False lrch3
XM_039777541.1 mRNA downstream 415012 7262974 ~ 7267714 (-) True LOC120544032
XM_039788182.1 mRNA upstream 3975 7712652 ~ 7715037 (-) True LOC120551046
XM_039788203.1 mRNA upstream 274417 7983094 ~ 7986427 (-) True LOC120551059
XM_039776786.1 mRNA upstream 313951 8022628 ~ 8063341 (-) False LOC120543635
XM_039776779.1 mRNA upstream 318728 8027405 ~ 8063338 (-) True LOC120543635
XM_039777191.1 mRNA upstream 370547 8079224 ~ 8098464 (-) True LOC120543856
unassigned_transcript_84 other downstream 172655 7510000 ~ 7510071 (-) True trnag-ucc
TU20455 other downstream 342118 7309914 ~ 7340608 (-) True lrch3
TU20443 other downstream 474435 7207735 ~ 7208291 (-) False LOC120544114
TU20310 other downstream 546622 7129626 ~ 7136104 (-) True rpl35a
TU20329 other downstream 562685 7114719 ~ 7120041 (-) False LOC120543742
unassigned_transcript_85 other upstream 227579 7936256 ~ 7936327 (-) True trnaa-cgc
TU20786 other upstream 428624 8137301 ~ 8140775 (-) False LOC120551075
TU21348 other upstream 759680 8468357 ~ 8469760 (-) True G15757
TU21363 other upstream 893395 8602072 ~ 8602890 (-) True G15771
XR_005638459.1 other upstream 1145635 8854312 ~ 8854592 (-) True LOC120554466

Expression Profile