RNA id: TU20712


Basic Information

Item Value
RNA id TU20712
length 8084
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G15350
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7848994 ~ 7857158 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCAAAATTCACTCAGAAAACTAAAGCTTCTTCTTTATCTGTTCAGTTGTACAATATATCATTTGTAACAGATTCCAGTGAAGTTTAAAGAACATCACAAAGCATCTGAACTGGGATTAAAAGGCAGGAGTTCAAAACAGAACCGGACATTCAGCGTTAGCGTTTCTCAGCGCTGGTTCCCAGACCCCCTTAGATCAGGAGGGTGATTAACTCTTCTTCACTAAGgtcctgtttacacgtacaggCTTATTTAGaaaaaacggagacatttcccttcgtttgtgcccttcgtttacacacAAACTGACAATCGTAAAgtctccggccagagtggagattttggaaaacttcattccgattctgattggctaacgtgggcttgagcttctcgttacaccgccacctacaggtctggcgtgctcttgccggcatatataataatataaaaagtttattattttatggatttcacaaatttcagtgttaaacgttaacgttaaaccgtttaaatctgagcacgcgcgactcacatcgggcagtgacgtTGGGTAACCTGGGTAACCTGGCTATGGAACCAGGTTTCCAGGTTAcccaaccggtaggaatcggaccggattagaacgaaaattttggttcctcatttcggttcgtttgtttttgctttttttcccaaACGTTTTATTataattgttaaatttttcttctacacatgttcagcgcttatttctacgtcccatattttctgatttaaaaaacaaaaattttaaaacgggtcaatgtgggTCAACACAAGTGGTTAATGcatcgactgaaatattttccctccgtcgctccgaaacagacgtagaattatccccctttctctgtagtctaccgttagctagctaccgtaaatgtaggctacttttaaaatgccatattttcccctctgggctcaccagaacggacgtaaaagcacaTTACGGCTACCACATCTATAAAAGAGCCTTTTCTTTTatgtaatttttcagtttttcaagaatcggtttaggaatcggaatggTAAAAATCCAATCAATACCCCAAACCTAGTCTTTTcaggtttggcgcacaactagataaaatgtattgtgaacctaagtTGGATAAAAACCTGCCCGCGGGCCTTTGAGTTTGACACGAGGTGCCTCAGATCCTCAAACAATTGTTCAAATGACACAAATCTAAAAAGTTGGGAACCACTCGCCTGAGGAGAGAAACAGCTGGATGCTAGCATGTTAGCTTCCAGCTGAGTTGGTCTCTAACTATGCTGACAGATACCTGAAGAAGAGAACAAGATCAGTTGAGTCATATATAAAACTCTCACAGTGTGTCGATTATGACGTTACTCGGTTTAAATCGTAGCAGAGGAATCAAAAGTGCCGCGAAACCAAAATGAATTACAGCTGAACTTAGCGTGATGAGCGTGTGATCCCAGAACGGCTGTAAATACCAACCGTcaattcacaaaaaaacaacaaaaagaaatctAAAATATTCACAACAACATTATCTACAAAAATCAACCTCAATGATCTCACAAGAACATTTTCTTTGaccaaaacaaatcaaaatgtttCAGCATCAACAGATTAGTGCAATCAGAGTTACAACAAGACACAAAGTCAACTTCAAACCAAAGAGTTTAACTGCTGAAGTCTGTTTAAAAGGCCCTGAcgcaccaaccagacggccaatcAGACGCCagtaaagccagtcggactgatcggtCTCCCCGAGTCGGTCCAAGAAGGTCCTCAGAACTCACGTACGTTCAGCATAATACGTATCTATAATTAGTCCTTTCAGatgccgagctgcaccaatcacatcgctgTATCTgataccagtccttccagaaaaatgcagtttttttgtgattgttgcggggcaaaaatccttgatgaTGCGgcactttttcttaaaaaatgcgatggaatatgttatatatgatatttatggaattttatgcgataaatatgcggactttggttgactatgcgttgaattatatgatcgcataatcacgtttttctggagggactggataGCTGCAgtcggcgctaatctgtattgtcgcccaaaaaattaaaaccggaaatgacgaacgcGTCAGGTGGGGTCTGGCTTCTCTCCGAccgtcatggcggctcgtttggagtacgatctcatattgtactaaaatagttcaccgaaacgtgtttctggaaacattttaagagacaAACAgaccgtgcagttgctgaatccgtcttcatttcagatcaacaaagattCAAAGATTTTAAGAGGCTGTTCGTCgggctcatcccgctcgtcatttccaggttAGCTCTCcgccaatcagatgggtcattgagTCAAATCAGCCAAAATGAATGCCGACGGACTGTCAGACAGCCGATTATCTGGTTGGTGCGTCAGGCCcttaacaacacacagacagtctgCTGGTAGAGATTAATAAATCATCCTGTTCTCTGTCTTTAATAATGAGGAGTTCCTCAGGGAAGCATCCTGGGGCCTCGGTTGTTTCTATTAAACCTGATCTAAACAGTCCAACAGTTAGTAAATCATCCTGTTCTCTGTCTTTAATAATGAGGAGTTCCTCAGGGAAGCATCCTGGGGCCTCGGTTGTTTCTATTAAACCTGATATTAAAAAAGGTCCACATGGTTTCTATAAAACCTGATATAAACAGTCCAACAGTTAGTAAATTATCCTGTTCTCCGTCTATTCCAGAGTCAGGTGAGAAGATGGAGGTCCAGTACATCACACAAGTCTTTATTATTCCAGATTGCAGAGTTATTTCCAGGAAACTTCTAAAAGGAAGTTATCAGGGAAAATCACTGAGAGTTACAATTTGTTTCCTTTATTTCCCTCAAATTTACTTACAAAGCGGACTCTAAAAACATGAGAatcagccaaaaaaacaacaacaacacaacctTTATAACTAAAGAATACATAATCCCAAAAGGTCCCTTAAACCCTTAAATACCTGGAAAAcaaagagaggaaatgacctccTAGGGAGTTACGGCCCTGGGTCCATGGGAGTTTATCATTTTGAAGCATTTTTTAAGTCCAGCACTGGGCGTTTCCTGCCTCTGCTGCCCCCTGGTGGCAGTTAGTCTGCTGCATGAGAAGCGATTAGTGTCAGCAAACAGCGTACTCCACAAtatcataatataatatatatctataatgtaatttattcagactgatctcatgaagtggcgtacgTACGACACGCCAATTTCGTATGcaattattggcgtgttatgaagacgcataGTGGcattttagcgtgtttatcaactagaggtgttgaaattaatcaaatattcGATGCACGGAATTGTAgacgtggacgatgctgcatcgataatcggccggctcataatcgattatttctgtttataatgcaatgtaggcctaacaacatttctgttaacatattctggtatgtttttgcacattcaggaagtgccatgtgctcagtgctgtatactttaatgtatccaagttatttagtatcAGAGCACTgcaaaatgtttagtttttgaagcttgaaaagctacgaattaaatatcctacattaACAGAAacatgtatttgacgcatcgatatatagagatatatataaataatcgGATTGAATCGAaacgggagatcagtgaagattcacacctctattatcaacgctgtttggcctccattgacttacattaccttgcgattgcgtgtgaattgacacgaaaatctgcgtagggaggttggtcggggggggaggatgggtcaaacaacacaggaccttcacccaggagaccggggatcaggTCCTGTGTGTCAcattttcctaaactcaactgtcggTTTCTTCTCGCCACGTGGCGTGCatgtttacgtccgctgtatacagcgtagacatccACGCGGAGAGCTCAagatgcgtacagataacaacGCCACTTGtcttaagaaagtgggcgtgtatgtttacgccaAGTCATGATGTAacgttgaatttttttttacatgtgcaACTTggtgtaaatctgtaaattcAATAATCTAAAGGCTTGGGAATCATTTGGGGGTTTTTTTGCGATATCGGTGCTAAAATGAtgcttttaaaacggtgcctgaacagatactaaaaaaacaaacccaaaaCAGAGCGTTTTCAGAGGGAAGATGAATACagatatattcagacagacagtataagaaaaataaagtttttggATCATTTAAGCAGGTAAACATGTTTactagaaacccaaaatacaaatgcaaaaatttcccatttacattcattatatGCATCCTTTTTGAGGCGTAATAGGCGACGTCCCTTTTGACCAATCAGAAGCCCACTGTAAGCGTGGCTTCAGGAGAGGCCCTAGACGGTACCCTCCAAGTTGCGTAAAAATCGGATGACCCATTCATAAACTTTTCATAATTGGAGCGCCCCCTAGTGGACAATCTCCGCCAAATTTGGTCCCCAGTCTCAGAGTGTCGTGGCAAACAAGCAGATTAAGTTTCGTGGTGATAGAATTTAACTTGGCCAAGATATGCAAATGTTTGCGTTTTTTTTTAGTCGCTAGCAATGAAAATTAGTTTGATCGTAATTTGCGCATTTTTGAACCAATAACAATTCTTTTGAAAAGTTTTTctcaggtccatctggagatgctatgtGCCAACGTTCAGGCCGATCGGGAGAAAagcctaggaggagttcgaagaaatgggaaaaaaaaaaataggtttttGCGAATTATTCGATAATACAGAAAATAACCTaaaaaaatgagcagaataCGGGACCTCAACGTCCTCCGAAATCAGAGAAAAAAGAGGCTTCAGAACTTTATTAACGTTATTAAATTGTCTTCAGTATCAAAGTAATAAAGTGAAAGTAGTCGTCTGtaatattttcataaaatattccgacttaaaaaaagcaaatttcgatttttttttaaatgacatcatTAGGGTTTTtgtagtagggttgggtaccgttttttttttgtttttttttttactctctcttctttctcacctagctgtcctgtcaaataaaggcggaaaagccctaaaaaattatctttaaaacggtgccggtgcctaaacggtccctgaaccgatacttaatatgtatttttaaatataatatatatacagtcaggGACATTTAACTCTCCTGTTTCTTactataagaaaaaaaaaggagcccGAAACGACCTCCTGTTTcctctggtcaaatttgactcattttcaaagtgtctatatcagaaatttgggtttctttttaaaccaaatTGCCTAAAATGAACGTGGTTGTGTTCTATAAAACGCTCTTCAAGTAATATgaaggatcagttcactactttcagtGACATTTGGGgggttttattaaattttatagcacatttctgctttttaaactcaaaaaaattaggtttattgaccctGAATTCAgagaataagtgtaaaactcgTGGTGTAAGAGTTGGTAGTAGTGGGGGTGTgtttagattgctaacgttagctcaaaacaccattccagtgacagcctttgttgtgtttgattgctaacttgtagccagcagtgaacaAACGTCgttatgtaggtccatttttaCTGTTTTAACATTACAGAAAGCTctcgttagcatcttgtaggctacttgtctctcgttagcatcttgtaggctacttgtctcTCGTTAGCATCTTAGAGACTACTTGTCTCAAAGTGATGCATGCGCGACTCAGATCTGCACTCGATTCACATCGGGTAGGGACAGCGCTGCGGCAAAAAACAGACGGCGCTCAGCAACACCAAAGCCAAGAGCAAAAACGCGGTTAGAAAAAGCCGGCCAGGCTGCTAAAACGCGCTCTCTCTGATCGCAGATTTACCGAAGTTCCTCCCAGGAAACCACAGGCGTGTAAACTAAAGTCCTATTTGTTCCCAGACACGTTGATCGGCTCGTTTATTCAGTGATTAAGAGTTAGTATCGTGGAGGAATCTGAAGGGAAACAGCAGCGTTCAGATTTAGCGCCGCGATTGACACGAGGAGCACCAATCCCCTGAGGCTGGGGGGGGCGGGACTTAGTTCAAGTGGAGGTCAAAAGGCTACTAGcctgctgattggctgctggGCTGAAGCTGAAGTAGAAGAAAGGCTGAAGTGGGTTTTAGAGGTTGTgagttatttttgtaaagtgTGAAGTCACTGCAGACTGTAAACAAAGTAGAGGCTGAAGTAAGAGTCTGCGTTTCACAGGAAGTTAAAGACGACTGCCGCTGGACCCTCGTCGGAGCGTTTTTCTTTGGTAGGAGGCGAGAGGCGAGCGGCTGAAGGCACAGACGGGTTCCTGCTCCATGAGTTTAAAGGTTAAAGTTCGTAAATCAGAGACGTCACTCAGCTGCTGTACGTTCAGTGTTCAAGCAGCAGCTTCACATTAAGGTCACTTCttacattcttcttcttcttcttcttcttatgtACACTAGAAAAATAGggttaccaaaataaaagcatctcTGTCCCAAGAAGGTCCCTTCAGGAGGTTCGTTTGGGCCCTGCAGGAGAAACACAAgatttaataacaataacatctCCGGTCCAATGTCCACTGAGTTTGGTTAGActgggagcagcaggagagcTGCACCCATCAGTCGACCAATCATCAGTCCGGTGTTACTCATCGACCCAAGCCTTTTTCTCTGactttttcatcccttttttctaactttttcgtcccttttttctgactttttcatcccttttttctgactttttatccctatttttctgactttttcgtctttttttctgacttctTTCGTccatttttttctgactttcttcccatttttctgactttttctttGATTTTTTCCCATccctttttttctgactttttcgtccctttttctctgactttttcatcccttttttctaactttttcgtcccttttttctgactttttcgtcccatttttctgactttttttgtcccttttattctgacttttttcgtcCCCTTTTTCGTCCcctttttttgtccattttttctgactttttcctgacattttttgtcccatttttctgatttttttcgTCCCATTTTTCGTccatttttttctgaatttttcATCCTTTTTTCTGACTTATTCGTCCCTTTTTTCACCTAATTTTTGAGTCAAAAAAGCTGAAATGACGACTAATTATTTTGAGTACTATTAGAAGAACGTACGTTGAAGGAGAACCAAAGACAGTGTATGTCAGAGATGAGTCAGAACACCATTTAGAAACCGTCCTGTACACGGCAGTAAATAATGCGGTGAGATCAGGGGTTTCCTGCGTAGAGAAAGTTTTGGcagctgtcagctgttatcagaggaaaCGAGAACTAACAGAAACTCTCCGAACCAAACGGCCGACAGACATCAAGATGTTCCCCGTCTCTCTGgagtttaatttaaaacacaCGAAGACACTTTATGATCCTTTTCACACACCTCgcttaaaatatataaagagaagaCTGTCCTGTTGTGACGCTTGTAGAGCcgatcacacacacgcacaccactacactgctctctcacacacacacacaccactacactgctctctcacacacacacgcacaccactacactgctctctcacacacacacacaccactacactgctctctcacacacacacacaccactacactgctctcacacacacacacacaccactacactgctctctcacacacacgcacaccactacactgctctctcacacacacacgcacaccactacactgctctctcacacacacacacacaccactacactgctctctcacacacacacacacaccactacactgctctctcacacacacatgcacaccactacactgctctctcacacacacaccactacactgctctctcacacacacacacacacacacaccactacactgctctctcacacacacacacaccactacactgctctctcacacacacacacacacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20675 lncRNA downstream 3290 7800539 ~ 7845704 (-) False G15339
TU20667 lncRNA downstream 3290 7844914 ~ 7845704 (-) False G15339
TU20674 lncRNA downstream 7145 7806112 ~ 7841849 (-) False G15339
TU20671 lncRNA downstream 8876 7798877 ~ 7840118 (-) False G15339
TU20665 lncRNA downstream 8876 7805143 ~ 7840118 (-) False G15339
TU20696 lncRNA upstream 2587 7859745 ~ 7860218 (-) False G15346
TU20699 lncRNA upstream 2587 7859745 ~ 7860482 (-) False G15346
TU20701 lncRNA upstream 2587 7859745 ~ 7873063 (-) False G15346
TU20702 lncRNA upstream 2587 7859745 ~ 7860482 (-) False G15346
TU20704 lncRNA upstream 2587 7859745 ~ 7860218 (-) True G15346
XM_039788182.1 mRNA downstream 133957 7712652 ~ 7715037 (-) True LOC120551046
XM_039777416.1 mRNA downstream 339849 7495033 ~ 7509145 (-) True polr2d
XM_039777175.1 mRNA downstream 436487 7398193 ~ 7412507 (-) False LOC120543849
XM_039777167.1 mRNA downstream 437347 7398193 ~ 7411647 (-) True LOC120543849
XM_039780074.1 mRNA downstream 505101 7320761 ~ 7343893 (-) False lrch3
XM_039788203.1 mRNA upstream 125936 7983094 ~ 7986427 (-) True LOC120551059
XM_039776786.1 mRNA upstream 165470 8022628 ~ 8063341 (-) False LOC120543635
XM_039776779.1 mRNA upstream 170247 8027405 ~ 8063338 (-) True LOC120543635
XM_039777191.1 mRNA upstream 222066 8079224 ~ 8098464 (-) True LOC120543856
XM_039788227.1 mRNA upstream 280866 8138024 ~ 8155303 (-) False LOC120551075
unassigned_transcript_84 other downstream 338923 7510000 ~ 7510071 (-) True trnag-ucc
TU20455 other downstream 508386 7309914 ~ 7340608 (-) True lrch3
TU20443 other downstream 640703 7207735 ~ 7208291 (-) False LOC120544114
TU20310 other downstream 712890 7129626 ~ 7136104 (-) True rpl35a
TU20329 other downstream 728953 7114719 ~ 7120041 (-) False LOC120543742
unassigned_transcript_85 other upstream 79098 7936256 ~ 7936327 (-) True trnaa-cgc
TU20786 other upstream 280143 8137301 ~ 8140775 (-) False LOC120551075
TU21348 other upstream 611199 8468357 ~ 8469760 (-) True G15757
TU21363 other upstream 744914 8602072 ~ 8602890 (-) True G15771
XR_005638459.1 other upstream 997154 8854312 ~ 8854592 (-) True LOC120554466

Expression Profile