RNA id: TU20717


Basic Information

Item Value
RNA id TU20717
length 476
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G15353
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7872052 ~ 7900120 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagagacagacagacagagagagagagagagagacagacagacagagagacagacagagagagagacagacagacagacagagagacagacagagacagacagagagagagacacagagagagagagagacagagagagagagagagagagagagagagagacagacagagacagagagagagacagagagagagagagacagagacagacagagagagagacagagagacagagagagagacagacagacagacagagagctagacagacagagagagagagagagagacagacacctTGAGGTGGACCCAGGCCTCCAGATGCCTGTTGCTGTTGAACAGACACAGCAGACCGGAGCTGGTGATGCAGAAGGTTTTGGACGCCGTGAGGCCACGCCCACACGCCACCCCGCTGAACACGCTGTTCTTATGGTCGCCTAGCAACCCAgaccgaccaatcagaggcaCCGTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20670 lncRNA downstream 1771 7800299 ~ 7870281 (-) False G15339
TU20697 lncRNA downstream 11570 7817442 ~ 7860482 (-) False G15346
TU20703 lncRNA downstream 11570 7817442 ~ 7860482 (-) False G15346
TU20706 lncRNA downstream 11570 7833245 ~ 7860482 (-) False G15346
TU20699 lncRNA downstream 11570 7859745 ~ 7860482 (-) False G15346
XR_005636436.1 lncRNA upstream 171472 8071592 ~ 8072887 (-) False LOC120544065
XR_005636435.1 lncRNA upstream 171472 8071592 ~ 8072887 (-) True LOC120544065
TU20776 lncRNA upstream 219395 8119515 ~ 8125709 (-) True G15403
TU20785 lncRNA upstream 237181 8137301 ~ 8141402 (-) False LOC120551075
TU20787 lncRNA upstream 237181 8137301 ~ 8140775 (-) True LOC120551075
XM_039788182.1 mRNA downstream 157015 7712652 ~ 7715037 (-) True LOC120551046
XM_039777416.1 mRNA downstream 362907 7495033 ~ 7509145 (-) True polr2d
XM_039777175.1 mRNA downstream 459545 7398193 ~ 7412507 (-) False LOC120543849
XM_039777167.1 mRNA downstream 460405 7398193 ~ 7411647 (-) True LOC120543849
XM_039780074.1 mRNA downstream 528159 7320761 ~ 7343893 (-) False lrch3
XM_039788203.1 mRNA upstream 82974 7983094 ~ 7986427 (-) True LOC120551059
XM_039776786.1 mRNA upstream 122508 8022628 ~ 8063341 (-) False LOC120543635
XM_039776779.1 mRNA upstream 127285 8027405 ~ 8063338 (-) True LOC120543635
XM_039777191.1 mRNA upstream 179104 8079224 ~ 8098464 (-) True LOC120543856
XM_039788227.1 mRNA upstream 237904 8138024 ~ 8155303 (-) False LOC120551075
unassigned_transcript_84 other downstream 361981 7510000 ~ 7510071 (-) True trnag-ucc
TU20455 other downstream 531444 7309914 ~ 7340608 (-) True lrch3
TU20443 other downstream 663761 7207735 ~ 7208291 (-) False LOC120544114
TU20310 other downstream 735948 7129626 ~ 7136104 (-) True rpl35a
TU20329 other downstream 752011 7114719 ~ 7120041 (-) False LOC120543742
unassigned_transcript_85 other upstream 36136 7936256 ~ 7936327 (-) True trnaa-cgc
TU20786 other upstream 237181 8137301 ~ 8140775 (-) False LOC120551075
TU21348 other upstream 568237 8468357 ~ 8469760 (-) True G15757
TU21363 other upstream 701952 8602072 ~ 8602890 (-) True G15771
XR_005638459.1 other upstream 954192 8854312 ~ 8854592 (-) True LOC120554466

Expression Profile