RNA id: TU20740


Basic Information

Item Value
RNA id TU20740
length 479
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G15372
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 7984935 ~ 7999507 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTACTtgactgttttgttgtttgtctctgacatacttcctgtctgtgtcagtAGACCTCGTAGGAGATTCTGATTGGTCTCTtgtgaaagacccaggaggaagcggaggaacaagtccaggtgtccatttggactctgtaaggccttgtctacagcactctggtagaactgtgttgatgttgtttgttcttctgacagcaggttgactccagagttggtgaatgtcagatgaacatgaagagcagccagaaactcctgaacactcagatggacgaagcagaacaccttgtcctggtacagtccactctcctctttaaagatctgtgtgaacactcctgagtacatTGAGGCTGCTGtgatatcgatgccacactctgtcaggtctgattcagagaagatcaggttgcctttctgcagctgctcaaaagccagttttcccagagactcgATCATCTTGCTagtgtctggactccagtg

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20578 lncRNA upstream 84920 7872416 ~ 7900015 (+) True G15275
TU20556 lncRNA upstream 92462 7882202 ~ 7892473 (+) False LOC120543711
TU20579 lncRNA upstream 99240 7885062 ~ 7885695 (+) False G15276
TU20580 lncRNA upstream 99240 7885062 ~ 7885695 (+) True G15276
TU20572 lncRNA upstream 114648 7798837 ~ 7870287 (+) True G15269
TU20748 lncRNA downstream 29634 8029141 ~ 8129061 (+) True G15378
TU20749 lncRNA downstream 75852 8075359 ~ 8129061 (+) False G15378
TU20782 lncRNA downstream 137995 8137502 ~ 8154585 (+) True G15408
TU20803 lncRNA downstream 173157 8172664 ~ 8173812 (+) True G15417
TU20814 lncRNA downstream 213686 8213193 ~ 8213969 (+) True G15421
XM_039776883.1 mRNA upstream 98630 7858053 ~ 7886305 (+) True LOC120543711
XM_039777204.1 mRNA upstream 133956 7833422 ~ 7850979 (+) False rffl
XM_039777214.1 mRNA upstream 133956 7833422 ~ 7850979 (+) False rffl
XM_039777223.1 mRNA upstream 138051 7833422 ~ 7846884 (+) False rffl
XM_039777073.1 mRNA upstream 156848 7826643 ~ 7828087 (+) True LOC120543808
XM_039788213.1 mRNA downstream 115878 8115385 ~ 8118646 (+) True LOC120551067
XM_039777293.1 mRNA downstream 124118 8123625 ~ 8125669 (+) True LOC120543907
XM_039788241.1 mRNA downstream 245124 8244631 ~ 8307210 (+) True LOC120551081
XM_039776949.1 mRNA downstream 399893 8399400 ~ 8422336 (+) True nyap2a
XM_039776897.1 mRNA downstream 429718 8429225 ~ 8469760 (+) True LOC120543718
TU20559 other upstream 141278 7833323 ~ 7843657 (+) False rffl
TU20560 other upstream 141278 7833478 ~ 7843657 (+) False rffl
TU20561 other upstream 141278 7836049 ~ 7843657 (+) False rffl
TU20573 other upstream 157645 7826610 ~ 7827290 (+) False LOC120543808
TU20486 other upstream 492878 7491365 ~ 7492057 (+) True G15234
TU20798 other downstream 171189 8170696 ~ 8172491 (+) True G15415
TU20801 other downstream 171189 8170696 ~ 8171775 (+) False G15415
XR_005636425.1 other downstream 796563 8796070 ~ 8808829 (+) False LOC120544007
XR_005636426.1 other downstream 796563 8796070 ~ 8808770 (+) True LOC120544007
XR_005636424.1 other downstream 796577 8796084 ~ 8808829 (+) False LOC120544007

Expression Profile