RNA id: TU20748


Basic Information

Item Value
RNA id TU20748
length 450
lncRNA type read_through
GC content 0.54
exon number 3
gene id G15378
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8029141 ~ 8129061 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctcTTCTGCACCTGTTTGGCGtccttctgtgtgtctgtgtgtatgtgtgtgtgtgtgtgtctgtgtgtctgtgtgtgtctctgtctttgtgtgtgtgtgtgtttgtgtgtgtgcgcgagtgtgtctctgtatctatgtgtgtgtgtgtctctgtctctgactgtgtgtttgcatgagtgtctgtgtgtgtgtgtttgtatgtctgtttgtgtctgggtgtatgtgtgtttgtctgtgtgtatgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaccagcTGTGACTAACGCAGCGCTATGATTGGAGGACTCTTCATCTACAACCACAAGGGGGAGGTGCTGATCTCGCGGGTCTACCGCGATGACATCGGgaacaatgcgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20740 lncRNA upstream 29634 7984935 ~ 7999507 (+) True G15372
TU20578 lncRNA upstream 129126 7872416 ~ 7900015 (+) True G15275
TU20556 lncRNA upstream 136668 7882202 ~ 7892473 (+) False LOC120543711
TU20579 lncRNA upstream 143446 7885062 ~ 7885695 (+) False G15276
TU20580 lncRNA upstream 143446 7885062 ~ 7885695 (+) True G15276
TU20782 lncRNA downstream 8441 8137502 ~ 8154585 (+) True G15408
TU20803 lncRNA downstream 43603 8172664 ~ 8173812 (+) True G15417
TU20814 lncRNA downstream 84132 8213193 ~ 8213969 (+) True G15421
TU20851 lncRNA downstream 205124 8334185 ~ 8334478 (+) True G15445
TU20853 lncRNA downstream 224667 8353728 ~ 8354098 (+) True G15447
XM_039776883.1 mRNA upstream 142836 7858053 ~ 7886305 (+) True LOC120543711
XM_039777204.1 mRNA upstream 178162 7833422 ~ 7850979 (+) False rffl
XM_039777214.1 mRNA upstream 178162 7833422 ~ 7850979 (+) False rffl
XM_039777223.1 mRNA upstream 182257 7833422 ~ 7846884 (+) False rffl
XM_039777073.1 mRNA upstream 201054 7826643 ~ 7828087 (+) True LOC120543808
XM_039788241.1 mRNA downstream 115570 8244631 ~ 8307210 (+) True LOC120551081
XM_039776949.1 mRNA downstream 270339 8399400 ~ 8422336 (+) True nyap2a
XM_039776897.1 mRNA downstream 300164 8429225 ~ 8469760 (+) True LOC120543718
XM_039777099.1 mRNA downstream 418557 8547618 ~ 8566587 (+) True rnf168
XM_039777085.1 mRNA downstream 452418 8581479 ~ 8621108 (+) True LOC120543817
TU20559 other upstream 185484 7833323 ~ 7843657 (+) False rffl
TU20560 other upstream 185484 7833478 ~ 7843657 (+) False rffl
TU20561 other upstream 185484 7836049 ~ 7843657 (+) False rffl
TU20573 other upstream 201851 7826610 ~ 7827290 (+) False LOC120543808
TU20486 other upstream 537084 7491365 ~ 7492057 (+) True G15234
TU20798 other downstream 41635 8170696 ~ 8172491 (+) True G15415
TU20801 other downstream 41635 8170696 ~ 8171775 (+) False G15415
XR_005636425.1 other downstream 667009 8796070 ~ 8808829 (+) False LOC120544007
XR_005636426.1 other downstream 667009 8796070 ~ 8808770 (+) True LOC120544007
XR_005636424.1 other downstream 667023 8796084 ~ 8808829 (+) False LOC120544007

Expression Profile