RNA id: TU20782


Basic Information

Item Value
RNA id TU20782
length 482
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G15408
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8137502 ~ 8154585 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGATGTCAATGGAcatgaggatgtgtgtgtgtgtgtctgtgtgtgtgtgtatgtgagtgtgtttgtgtgtgtgtgtgtgtgtgagtgtgtttctgtgtgtgtgtgggcgcgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgggtgggtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgggtgggtgtgtgtgtctgtgtgtgtgtgtgcgcgcgtgcatgtgtgtgtgtgtgtgtgtgtatgtgtgtcagtgtgtgtgagtgtgtctgtctgtctgtctgtctgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaccctcTCCATCCGTTGCTGTGTTTTGGGTTTCCGGTGGCGACGGCGTTGTCGCCTGACGAGTCGTGGCGACGAGCTGCTCTGCCCTGTTGATTGGCTGAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20748 lncRNA upstream 8441 8029141 ~ 8129061 (+) True G15378
TU20749 lncRNA upstream 8441 8075359 ~ 8129061 (+) False G15378
TU20740 lncRNA upstream 137995 7984935 ~ 7999507 (+) True G15372
TU20578 lncRNA upstream 237487 7872416 ~ 7900015 (+) True G15275
TU20803 lncRNA downstream 18079 8172664 ~ 8173812 (+) True G15417
TU20814 lncRNA downstream 58608 8213193 ~ 8213969 (+) True G15421
TU20851 lncRNA downstream 179600 8334185 ~ 8334478 (+) True G15445
TU20853 lncRNA downstream 199143 8353728 ~ 8354098 (+) True G15447
TU20854 lncRNA downstream 208315 8362900 ~ 8363246 (+) True G15448
XM_039777293.1 mRNA upstream 11833 8123625 ~ 8125669 (+) True LOC120543907
XM_039788213.1 mRNA upstream 18856 8115385 ~ 8118646 (+) True LOC120551067
XM_039776883.1 mRNA upstream 251197 7858053 ~ 7886305 (+) True LOC120543711
XM_039777204.1 mRNA upstream 286523 7833422 ~ 7850979 (+) False rffl
XM_039777214.1 mRNA upstream 286523 7833422 ~ 7850979 (+) False rffl
XM_039788241.1 mRNA downstream 90046 8244631 ~ 8307210 (+) True LOC120551081
XM_039776949.1 mRNA downstream 244815 8399400 ~ 8422336 (+) True nyap2a
XM_039776897.1 mRNA downstream 274640 8429225 ~ 8469760 (+) True LOC120543718
XM_039777099.1 mRNA downstream 393033 8547618 ~ 8566587 (+) True rnf168
XM_039777085.1 mRNA downstream 426894 8581479 ~ 8621108 (+) True LOC120543817
TU20559 other upstream 293845 7833323 ~ 7843657 (+) False rffl
TU20560 other upstream 293845 7833478 ~ 7843657 (+) False rffl
TU20561 other upstream 293845 7836049 ~ 7843657 (+) False rffl
TU20573 other upstream 310212 7826610 ~ 7827290 (+) False LOC120543808
TU20486 other upstream 645445 7491365 ~ 7492057 (+) True G15234
TU20798 other downstream 16111 8170696 ~ 8172491 (+) True G15415
TU20801 other downstream 16111 8170696 ~ 8171775 (+) False G15415
XR_005636425.1 other downstream 641485 8796070 ~ 8808829 (+) False LOC120544007
XR_005636426.1 other downstream 641485 8796070 ~ 8808770 (+) True LOC120544007
XR_005636424.1 other downstream 641499 8796084 ~ 8808829 (+) False LOC120544007

Expression Profile