RNA id: TU20787


Basic Information

Item Value
RNA id TU20787
length 3436
lncRNA type sense_over
GC content 0.43
exon number 2
gene id LOC120551075
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8137301 ~ 8155303 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAGTATTAAGTGAGGTCAGCTTGCATCATGTTTTCGTGCCGCTGTGTTTTAACGTGCTGGATGATGTCATTTTTCCCACTGTGcactacattaaaatcaatgcgacacaccttacaaaaagcgtggaggttgttgatatgactaggtaagatgcatTTAAGTTGTTgcgcccaacactgttgaaatttacagctacagtggggagaacaagtatttgatacacagCATATAGAGGTCTgtatttttatcataggtacacttcaattGTGAGagacggaatctaaaacaaaaatccagaaaatcacattgtgatttttaaataattaatttgcattttattgcatgacataagtatttgatcacctaccaaccagtaagaattccgctctcacagacctgttttttctttctataaaagccctcctgttctccactcattacctgtattaactgcacctgtttgaactcgttacctgtataaaagacacctgtccacacactcaatcaaacagactccaacctctccacaatggccaagaccagagagctgtgtaaggacatcagggataaaactgtagacctgcacaaggctgggatgggctacaggacaataggcaagcagcttggtgagaaggcaacaactgttggcgcaattattagaaaatggaagttaCATTAGATGTTTTgacattagacaaacatattggtctgattaattataaaggagtttgggccgtgctgcaaattacgggagtttcccgggagaaataacaaaccgggagATAGGGCTAAGGCTCCGGGAGTAAAAAGGGGAGTGTTTGCAGGTATGCTCCagagatgaatggatgagtcatCGTGGATGTTAGAGCTGTAGAGGTGAATGGATGAGTCATCGTGGATGTTAGAGCTGTAGAGGTGAATGGATGAGTCATCGTGGATGTTAGAGCTGTAGAGGTGAATGGATGAGTCATCGTGGATGTTAGAGCTGTAGAGGTGAATGGATGAGTCATCGTGGATGTTAGAGCTGTAGAGGTGAATGGATGAGTCATCGTGGATGTTAGAGCTGTAGAGGTGAATGGATGAGTCATCGTGGATGTTAGAGCTGTAGAGGTGAATGGATGAGTCATCGTGGAtgttagagctgtagagatgaatggatgagtcatCATGGATGTTAGAGCTGTAGAGatgaatggatgagtcatCGTGTAGAGGTGAATGGATGAGTCATCGTGGATGTTAGAGCTGTAGAGGTGAATGGATGAGTCATCGGGATGTTAGAGCTGTAGAGGTGAATGGATGAGTCATCGTGGAtgttagagctgtagagatgaatggatgagtcatCGTGGAtgttagagctgtagagatgaatggatgagtcatCGTGGATGTTAGAGCTGTAGAGGTGAATGGATGAGTCATCGTGGATGTTAGAGCTGTAGAGGTGAATGGATGAGTCATCGTGGAtgttagagctgtagagatgaatggatgagtcatCGTGGAtgttagagctgtagagatgaatggatgagtcatCGCGGATGTTTAAATGTGTGACTGTGTAACAGGAAGTGGCAGCAGCGGATCAAACTGCAGCGATGCTCAGAAGGCCGGAGGACGAgggagccaatcacagcgcacCAAACAGGAACAGGAAGTGGTTGCGTCACCGGACAAACAGCCTGAGCCTCCTTCCCCTCCCCCCGCCTCCTTCCCTGGTCTCCATGGTAACACAGACTCAAAGGAGGAGCTTCCCGCCGGGCGCCAGTCCTTCCGCCTCGCCGTGGGAAACCCCGGAGACTTCTTTGTGGACGTCATGTGACCCTGTGATGATGTCACACCCTGTCAGGTGACGGAGGAACACAGACTGTAAGAATAGGGACAAAGTCTGGGTGATGGTCTGCTGAAACCTCTCCTGGTATTTTAGGGATTAGTGTCTAACTCGGCTACATTACAGCGTGATGTCTGAAACAGGACAGTCTAATGTTTCTCTGTTTTATGTCTCTTTCCCTCAGAAATGGATCCTAGAGGAAACTCTAGAAAGGCTTGAACAGCTGGAACTTCCCCTCTTTTAGCGATTAGCTTAGCACAACAACatgtcatcctccccagctccaacCCCTCGTTAAAAACAGCCACATCTGGCTCTAGAAACGGTTCCTCAAGTTCAGTATAGTCACAGTCTCGGGTCCAGACCGCATCCACCAGTTAGGATCCAGAGCAGATTCTGGTTCTGGTTTTAACttgtgtgttgtcttcccgtcaacgttttgtttttctgggtcaaaatttaaaattacaacttctttgttttggcatccgtgcagtttagtgtcccaaattccacTAGGGCCATGCCGAGACCCGCTCTACGAGGCAGCTCGACTGGTCCAGTTCAGTTTTATTCatatagcacgtttaaaaacaaccatagttGACCAAAGTACTTAACAAGCTCCAAAAATCAAAGAGATAACATCCACAAACAATACACACtatataatacaaaataaacaacagTAGAAAAAGGTCAAGATATcaaagctcaacttgaattggggttagggttacggATACGGGGAATCTGGGACATTAAACTTCACGTATAACTTATTTTTCCCAACGTTTTCATtgtctttttcaacacttttttccTGACGTTTTCGTCACttatttttaaaggtttttctcacaacatttttgtaaattttttaaaattattttacttttttttttctctccaaatggtataaaattgaataaaacacccaaattcaatgaacgtagtgaactgatcatatATTTatcttgtgaagagcgttgtatggaaccatccactttatcttttggacaatttggttaaaaaaaaaaccaaattgCTGAaacagaaactttgaaaatgggtcagatttgcCCCGAGGACACCAGGAGGGGTAAATAAAGACCAGCAGGGTCTCTCAtctcagtgtgtttacatgctgtTTAAAAACCATTATATATTCGGGTTAAGGCGATACCCCGGTGTCTCTAACGCCAtgtaaacatcacacacacacacaaacacacacacacacacacgggcacagacacacagacacacacagacacacagacacacacacacacaaacacacaaacacactcacacacacacacacacacaaacacactcacatacacacacacacagacacacacacacacatcctcatgTCCATTGACATCCCTGTGTATTGAATCTGTTTTCATGTTTCTGATGTTAACCCCCCAGATCACATATTTAATAATGTACATTCCTATATTATGTAGATATGATGAACAGCCAGAttcttcttcttatttattttgCTCTCTGTCTTCACTCTGAAGCTTTTTAACACCCAATTAAAAAATGTTCAACTAAGTTTTTTGAGTcgtatttttgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20776 lncRNA downstream 11592 8119515 ~ 8125709 (-) True G15403
XR_005636436.1 lncRNA downstream 64414 8071592 ~ 8072887 (-) False LOC120544065
XR_005636435.1 lncRNA downstream 64414 8071592 ~ 8072887 (-) True LOC120544065
TU20683 lncRNA downstream 239397 7884862 ~ 7897904 (-) False G15339
TU20828 lncRNA upstream 114098 8254873 ~ 8255584 (-) True G15428
TU20830 lncRNA upstream 119376 8260151 ~ 8260686 (-) True G15430
TU20845 lncRNA upstream 184046 8324821 ~ 8325783 (-) True G15439
TU20852 lncRNA upstream 198386 8339161 ~ 8339380 (-) True G15446
XR_005636443.1 lncRNA upstream 342391 8483166 ~ 8484369 (-) True LOC120544083
XM_039777191.1 mRNA downstream 38837 8079224 ~ 8098464 (-) True LOC120543856
XM_039776786.1 mRNA downstream 73960 8022628 ~ 8063341 (-) False LOC120543635
XM_039776779.1 mRNA downstream 73963 8027405 ~ 8063338 (-) True LOC120543635
XM_039788203.1 mRNA downstream 150874 7983094 ~ 7986427 (-) True LOC120551059
XM_039788182.1 mRNA downstream 422264 7712652 ~ 7715037 (-) True LOC120551046
XM_039777235.1 mRNA upstream 228994 8369769 ~ 8392277 (-) True LOC120543874
XM_039776935.1 mRNA upstream 481707 8622482 ~ 8638087 (-) True LOC120543728
XM_039777372.1 mRNA upstream 541888 8682663 ~ 8684484 (-) True LOC120543940
XM_039778440.1 mRNA upstream 551299 8692074 ~ 8742043 (-) True LOC120544569
XM_039777139.1 mRNA upstream 687638 8828413 ~ 8841376 (-) True LOC120543840
unassigned_transcript_85 other downstream 200974 7936256 ~ 7936327 (-) True trnaa-cgc
unassigned_transcript_84 other downstream 627230 7510000 ~ 7510071 (-) True trnag-ucc
TU20455 other downstream 796693 7309914 ~ 7340608 (-) True lrch3
TU20443 other downstream 929010 7207735 ~ 7208291 (-) False LOC120544114
TU20310 other downstream 1001197 7129626 ~ 7136104 (-) True rpl35a
TU21348 other upstream 327582 8468357 ~ 8469760 (-) True G15757
TU21363 other upstream 461297 8602072 ~ 8602890 (-) True G15771
XR_005638459.1 other upstream 713537 8854312 ~ 8854592 (-) True LOC120554466
XR_005638457.1 other upstream 719586 8860361 ~ 8860640 (-) True LOC120554461
XR_005638456.1 other upstream 733566 8874341 ~ 8874620 (-) True LOC120554459

Expression Profile