RNA id: TU20814


Basic Information

Item Value
RNA id TU20814
length 256
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G15421
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8213193 ~ 8213969 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccttagccccagtgagtggctccaagtctggggtaacatcctccatgacccacatggtccacccttagccccaggaaggggctccaagtctggggtaacatcctccatgaaccccccgcctccatggtccacccttagccccaggaaggggctccaagtctgggataagatcctccatgaacccccccctccatggtccatccttagccccaggatggggctccaggtctggggtaacatgctccgtgaacccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20803 lncRNA upstream 39381 8172664 ~ 8173812 (+) True G15417
TU20782 lncRNA upstream 58608 8137502 ~ 8154585 (+) True G15408
TU20748 lncRNA upstream 84132 8029141 ~ 8129061 (+) True G15378
TU20749 lncRNA upstream 84132 8075359 ~ 8129061 (+) False G15378
TU20740 lncRNA upstream 213686 7984935 ~ 7999507 (+) True G15372
TU20851 lncRNA downstream 120216 8334185 ~ 8334478 (+) True G15445
TU20853 lncRNA downstream 139759 8353728 ~ 8354098 (+) True G15447
TU20854 lncRNA downstream 148931 8362900 ~ 8363246 (+) True G15448
TU20880 lncRNA downstream 221963 8435932 ~ 8436738 (+) True G15461
TU20890 lncRNA downstream 264200 8478169 ~ 8478418 (+) True G15471
XM_039777293.1 mRNA upstream 87524 8123625 ~ 8125669 (+) True LOC120543907
XM_039788213.1 mRNA upstream 94547 8115385 ~ 8118646 (+) True LOC120551067
XM_039776883.1 mRNA upstream 326888 7858053 ~ 7886305 (+) True LOC120543711
XM_039777214.1 mRNA upstream 362214 7833422 ~ 7850979 (+) False rffl
XM_039788241.1 mRNA downstream 30662 8244631 ~ 8307210 (+) True LOC120551081
XM_039776949.1 mRNA downstream 185431 8399400 ~ 8422336 (+) True nyap2a
XM_039776897.1 mRNA downstream 215256 8429225 ~ 8469760 (+) True LOC120543718
XM_039777099.1 mRNA downstream 333649 8547618 ~ 8566587 (+) True rnf168
XM_039777085.1 mRNA downstream 367510 8581479 ~ 8621108 (+) True LOC120543817
TU20798 other upstream 40702 8170696 ~ 8172491 (+) True G15415
TU20801 other upstream 41418 8170696 ~ 8171775 (+) False G15415
TU20559 other upstream 369536 7833323 ~ 7843657 (+) False rffl
TU20560 other upstream 369536 7833478 ~ 7843657 (+) False rffl
TU20561 other upstream 369536 7836049 ~ 7843657 (+) False rffl
XR_005636425.1 other downstream 582101 8796070 ~ 8808829 (+) False LOC120544007
XR_005636426.1 other downstream 582101 8796070 ~ 8808770 (+) True LOC120544007
XR_005636424.1 other downstream 582115 8796084 ~ 8808829 (+) False LOC120544007
TU20986 other downstream 635532 8849501 ~ 8850871 (+) True G15525
TU21004 other downstream 712623 8926592 ~ 8930270 (+) True G15540

Expression Profile