RNA id: TU20830


Basic Information

Item Value
RNA id TU20830
length 536
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G15430
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8260151 ~ 8260686 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggtccacccttagccccaggaaggggctccaagtctggggtaacatcctccatgaaccccccgcctccatggtccacccttagccccaggaaggggctccaagtctgggataagatcctccatgaacccccccctccatggtccatccttagccccaggatggggctccaggtctggggtaacatgctccgtgaaccccctccatggtccaccataagccaaatgaacaaaagcagagctaaacccaggatccgggtgtgagtccctgtaatgttagatcagcgctcctttgcaaatctcattctagagctgctccatgacatccatggtccacccttagccccagtgagtggctccaagtctggggtaacatcctccatgacccacatggtccacccttagccccaggaaggggctccaagtctggggtaacatcctccatgaaccccccgcctccatggtccatccttagccccaggaaggggctccaagtctgggataagatccaccatgatccccctcctccatggtccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20828 lncRNA downstream 4567 8254873 ~ 8255584 (-) True G15428
TU20785 lncRNA downstream 118749 8137301 ~ 8141402 (-) False LOC120551075
TU20787 lncRNA downstream 119376 8137301 ~ 8140775 (-) True LOC120551075
TU20789 lncRNA downstream 119376 8137301 ~ 8140775 (-) False LOC120551075
TU20776 lncRNA downstream 134442 8119515 ~ 8125709 (-) True G15403
TU20845 lncRNA upstream 64135 8324821 ~ 8325783 (-) True G15439
TU20852 lncRNA upstream 78475 8339161 ~ 8339380 (-) True G15446
XR_005636443.1 lncRNA upstream 222480 8483166 ~ 8484369 (-) True LOC120544083
TU21360 lncRNA upstream 243246 8503932 ~ 8504154 (-) True G15768
TU21380 lncRNA upstream 290905 8551591 ~ 8600313 (-) True G15783
XM_039788227.1 mRNA downstream 104848 8138024 ~ 8155303 (-) False LOC120551075
XM_039777191.1 mRNA downstream 161687 8079224 ~ 8098464 (-) True LOC120543856
XM_039776786.1 mRNA downstream 196810 8022628 ~ 8063341 (-) False LOC120543635
XM_039776779.1 mRNA downstream 196813 8027405 ~ 8063338 (-) True LOC120543635
XM_039788203.1 mRNA downstream 273724 7983094 ~ 7986427 (-) True LOC120551059
XM_039777235.1 mRNA upstream 109083 8369769 ~ 8392277 (-) True LOC120543874
XM_039776935.1 mRNA upstream 361796 8622482 ~ 8638087 (-) True LOC120543728
XM_039777372.1 mRNA upstream 421977 8682663 ~ 8684484 (-) True LOC120543940
XM_039778440.1 mRNA upstream 431388 8692074 ~ 8742043 (-) True LOC120544569
XM_039777139.1 mRNA upstream 567727 8828413 ~ 8841376 (-) True LOC120543840
TU20786 other downstream 119376 8137301 ~ 8140775 (-) False LOC120551075
unassigned_transcript_85 other downstream 323824 7936256 ~ 7936327 (-) True trnaa-cgc
unassigned_transcript_84 other downstream 750080 7510000 ~ 7510071 (-) True trnag-ucc
TU20455 other downstream 919543 7309914 ~ 7340608 (-) True lrch3
TU20443 other downstream 1051860 7207735 ~ 7208291 (-) False LOC120544114
TU21348 other upstream 207671 8468357 ~ 8469760 (-) True G15757
TU21363 other upstream 341386 8602072 ~ 8602890 (-) True G15771
XR_005638459.1 other upstream 593626 8854312 ~ 8854592 (-) True LOC120554466
XR_005638457.1 other upstream 599675 8860361 ~ 8860640 (-) True LOC120554461
XR_005638456.1 other upstream 613655 8874341 ~ 8874620 (-) True LOC120554459

Expression Profile