RNA id: TCONS_00006725


Basic Information

Item Value
RNA id TCONS_00006725
length 1767
RNA type mRNA
GC content 0.40
exon number 6
gene id XLOC_003442
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24120291 ~ 24310645 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acacactgctCAAATCCAGGATCCCTCCTCAGTTGTAAACTTTCTCCAACAACAACATGCATAGTAAAGACCAAATCTGCCATGAGGACTACCAGAGGGCGGCAGACTGGCTTCTGTCCCAGACACAGCACAGACCTAAAGTAGCCATCATTTGTGGCTCTGGACTGGGCATGTTGGCGGATGGGCTCAAGTGCCAGGACTCGTTCAAATATTCGGACATCCCTGGCTTTCCTCAAAGCACAGTGAAGGGTCATGCTGGACGGCTGGTTTTCGGGGAGCTCAAAGGGAAAACCTGTGTGTGCATGCAGGGCCGATTCCACATGTATGAGGGACACTCACTAAGCAAGGTCACATTTCCAGTAAGAGTGTTCAAGCTCTTAGGTGTCGACACTCTGATTGTTACTAATGCTGCGGGGTCATTAGCGGACAGTTATAATTGTGGTGACATTATGATCATACGTGACCACATTAACTTCCCCGGACTCGCTGGACTGAATCCTCTCAATGGGCCTAATGATGAAAAGTTTGGTCCACGATTTCCACCAATGTCTGGGGTTTACGACAGAGGCCTGCGGAAGATGGCGCTGGACATCTGTAAGGGCATGGGTGTCTCTCAGTATGTCCAAGAGGGTGTCTATTGTATGGTGGGGGGACCCAATTTTGAGAGCATCGCTGAAGCCCGACTTCTGCACAGACTGGGAGTGGATGCAGTTGGAATGAGTACAGCACCGGAAGTGTTGGTCGCCAGTCACTGTGGCATAAGAGTCTTCGGTCTCTCCCTCATCACTAACAAAGTGGTGAAAAGCTATGAGGACAACGAGACTGTCAATCATGAAGCTGTGTTGGAAGTGAGCAAAATGCGTTCAGAGACGCTTCAGGCTCTCGTCACAGAGCTCATCAGCCGCATGGACATCAACAACAACACGGCATGATGACATCAGCAGCACTGCACCTGCCAGTCAAAACCTCATCCACAAGAACCTGCAGCTACACCGTGATTATCTGTTCAATTCTCTACGCATGTTTCAATAACACAcgtcttttaaatatttatgatttcgGTATTTATGAGATCGCAAAAAATGATCTGATCAGATGGTGCCTTAACAACAAGCTTACTATTCAGttggtgctgtttttttttagtgCATAGAAGTTTGTGAATACAACTGTATATACATGATTGCGTAATGTTAATATCTTTTATTATAGAGTCAAATGTTTTATAAACTGCTATTACTATTAAAGTTTCCTAATGTTGATATTTTGATGATAAAGTTGAATATTTGAatctatttatatgtatttttttctctttgcattGTACAGTGCCACTGTATGTCGACATGTTTGTATAATCTTGTCCTGTATAAAACAAAAAGTATAATCTGATCTGTAATTCAAGaatgtcagcaaaaaaaaaaagtgtattttgaaaagtgtattttacaTATGCAATTTATATGAATAACTTATGCAAATCAATGTTACTTCTTAATTTAACATAACTgttatttaaagcataaaatgACAAATGGTCAAAATAAAAAGATGCCATGACTTCAGACATGTTCTTGTTTacttttagacaacacaatgttTAGAAATATATGGTGGAAGAACTCTGATTTGTAAGCAGCTCAAAAACTTGTTATTTTGACCAACATTGATTTCTATGTgtaaaaatgccttaaatattattttgtatttgaaatttgTAAGAAAAGTGATGAGatctttatagaataaaacaaattgtaTTCAAGC

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0048732 gland development biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0035775 pronephric glomerulus morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0072102 glomerulus morphogenesis biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0060429 epithelium development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0001889 liver development biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0048389 intermediate mesoderm development biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-040625-83 Predicted to enable purine-nucleoside phosphorylase activity. Predicted to act upstream of or within nucleoside metabolic process. Predicted to be active in cytoplasm. Is expressed in several structures, including eye; iridoblast; neural crest; optic vesicle; and presumptive retinal pigmented epithelium. Human ortholog(s) of this gene implicated in purine nucleoside phosphorylase deficiency and purine-pyrimidine metabolic disorder. Orthologous to human PNP (purine nucleoside phosphorylase).

Ensembl:

ensembl_id ENSDART00000029695

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008610 lncRNA upstream 38514 24120291 ~ 24251616 (+) False XLOC_003442
TCONS_00008400 lncRNA upstream 112479 24176418 ~ 24177651 (+) True XLOC_003443
TCONS_00006722 lncRNA upstream 138913 24116083 ~ 24151217 (+) True XLOC_003441
TCONS_00008608 lncRNA upstream 206542 24063943 ~ 24083588 (+) False XLOC_003440
TCONS_00006737 lncRNA downstream 41692 24339393 ~ 24340922 (+) False XLOC_003446
TCONS_00008611 lncRNA downstream 41695 24339396 ~ 24344016 (+) False XLOC_003446
TCONS_00006741 lncRNA downstream 42330 24340031 ~ 24343193 (+) False XLOC_003446
TCONS_00006743 lncRNA downstream 45309 24343010 ~ 24344016 (+) False XLOC_003446
TCONS_00006744 lncRNA downstream 45627 24343328 ~ 24344304 (+) False XLOC_003446
TCONS_00006720 mRNA upstream 233521 24046179 ~ 24056609 (+) True XLOC_003439
TCONS_00006717 mRNA upstream 245544 24034345 ~ 24044586 (+) False XLOC_003438
TCONS_00006716 mRNA upstream 257940 24027809 ~ 24032190 (+) True XLOC_003437
TCONS_00006715 mRNA upstream 260419 24027715 ~ 24029711 (+) False XLOC_003437
TCONS_00006713 mRNA upstream 282142 24002503 ~ 24007988 (+) True XLOC_003435
TCONS_00006726 mRNA downstream 731 24298432 ~ 24310645 (+) True XLOC_003442
TCONS_00006727 mRNA downstream 16230 24313931 ~ 24331318 (+) False XLOC_003445
TCONS_00006728 mRNA downstream 16293 24313994 ~ 24330192 (+) False XLOC_003445
TCONS_00006729 mRNA downstream 16447 24314148 ~ 24328651 (+) False XLOC_003445
TCONS_00006730 mRNA downstream 18409 24316110 ~ 24332052 (+) True XLOC_003445
TCONS_00006723 other upstream 111192 24178823 ~ 24178938 (+) True XLOC_003444
TCONS_00006700 other upstream 892745 23397270 ~ 23397385 (+) True XLOC_003428
TCONS_00006698 other upstream 1575999 22714015 ~ 22714131 (+) True XLOC_003425
TCONS_00006686 other upstream 2639492 21650522 ~ 21650638 (+) True XLOC_003418
TCONS_00006677 other upstream 3237786 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006731 other downstream 41661 24339362 ~ 24345423 (+) False XLOC_003446
TCONS_00006732 other downstream 41673 24339374 ~ 24345421 (+) False XLOC_003446
TCONS_00006735 other downstream 41684 24339385 ~ 24342063 (+) False XLOC_003446
TCONS_00006738 other downstream 41695 24339396 ~ 24340731 (+) False XLOC_003446
TCONS_00006746 other downstream 282878 24580579 ~ 24581114 (+) True XLOC_003447

Expression Profile

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