RNA id: XM_039776753.1


Basic Information

Item Value
RNA id XM_039776753.1
length 3661
RNA type mRNA
GC content 0.50
exon number 12
gene id LOC120543609
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8906730 ~ 9098564 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctgaacctgaacctgaacctgaacctggacctggacctggacctgaacctgaacccagctgtgtgtccatgaagtGTGTCCAGTCCATGGAGACACCAATACTATAAAAAGGTGTCCTGTAAGGGAGATTAAAATGGAGAAAAGAGTGAGGGAGATGAGAATtgaaaaggagaggaagaaagtggacatggagaggaggagactgAGGACCCATCAGAGACCTGATCCTGAATCTGAACctggacctgaacccagctgtgtgtcctttaaGAGCGATGGGTCATATCAAGGCTTCATTAACTTTAAAGGAGAGCAATCCTCTGCTGAAAAGAGGATCCATCAGAGACCAGACTCTGctggacctgaacccagctgtgtgtccttccAGAGTGACTGGTCACATGATCGCCGCCTTGACTTTAAAGGTCAACAGCCCTCTGCAGAAAAGAGACTGACTTCAGATCAGAAGATGAGTGgtttggaggaagaggaggatggagcAGAGTCTGTAGTATCTGGCTGTCTGTCTATGAAGAGTGACCGGTCCAATGATCATCCTCCAGACTTCAGTAATgaacctggaccctcagacacaaaaaagaggaagaggagagatgtTTCTGAGGAGGAGCAGCCGTCCAGATCCAGAACCAGAGCTGGACtgcagacagccaatcagagcagctcTGAACAAATGAATGTTGGTCGTCAGAAACATAAGATCAGGCTGAAGGGGACATTTGAACGTGTGACTGAAGGAGCTGAAACAGGAAGTAGAACCCTCCTCAACAGGATCTACACTCTCCTCTACCTCATAGAGGGACAGAGTGAAGAGGTTAATACCCAACATGAGGTGAGGCAGCTCGAGTCAGCTTCCAAGAAGAAGACCCTCCATGACTCTCCAATCAAGTGCTGTGACATCTTTAAAGCCTTACCTGACCAAAAGAAACACATCAGAGTGGTTCTGACGAGCGGCGTCGCTGGCGTTGGAAAAACCTTCTCAGTGCAGAAGTTCTGTCTGACCGCCGGCGAGGGTTTGGAAAACCAAGATATCAGTCTGGTGATTCCTCTTTCCTTCAGGGAGCTGAACTTGATCAAAGATGAGCAGTACAGTCTTCTGGAGCTGCTCCGTGTTTTCCATCCAACATTACAGGAGGTCCCAGCAGAGCAGCTCGCTGGCTCTAAACTTCTCTTCATCTTTGATGGCCTGGATGAAAGCAGACTTTACCTGGGTTTCAAGAAGAGGAAGACTGTTTCTGATGTCACACAGAAGTCATCAGTCAATGTGCTGTTGACAAACCTCATCCAGGGGAAGCTGCTTCCCTTGGCTCTCGTCTGGATAACTtcccgacctgcagcagccaatcagatccctcctgcaTGTGTTGACAGGGTAACAGAAGTACAAGGCTTCACTGATgcccagaaggaggagtacttcaggaagagagtcAGTGATGACGAGCTgtccagcagaatcatctcccacatcaagacctccaggagcctccacatcatgtgtctgatcccagtcttctgctggatcacggCTACAGTTCTGGACCACATGTTGACTACAGACCAGAGAGGAGAGcagcccaagaccctgactgacatgtactcacacttcctgctggttcagacaaagaggaagaagctCAAGTATGCTGAGGGACATGAGACGAGTCCACAGGAGCTGACGGAGGCTGACAGGGAAGTTCTTCTGAAGCTGGGGAGGCTGGCGTTTGAACAGCTGGAGAAAGGAAACATCATGTTCTACCAAGAAGACCTGGAGCGCTGTGGTCTGGATGTCACAGAGGCCTCGCTGTACTCAGGAGTTTGTTCAGAGATCTTCAAAAGAGAGAGTGTGATCTTCCAGAAAACTGTCTACTGCTTCGTTCATCTGagcgttcaggagtttctggctgcagtctacctgttccactgttacaccaacaggaacacacaggtaCTCAAGGACTTCCTGGGAGAAGATAATCGTGTTCGTTGGGACAATGATCATTACCCATCCCTGGATGACTTCCTGGAGACAGCCATGGAGAAATCCCTTGAAAGTGAAAATGGCCACCTGGACCTGTTTGTCCGCTTCCTTCATGGCCTCTCTCTGGAGTCCAACCAGAGACTCTTAGGAGGCctgctgggtcagacagacaacagtccAGAAATCATCCAGAGAGCCATCAACAACCTGAAGAATAGGAACAGGTATGAGATCTCTCCTGACAGAAGCATCAACATCTTCCACTGTCTGACGGAGATGAACGACCACTCAGTCCATCAGGAGATCCAAGAGTTCCTGAAGTCAGAGAACAGATCAGAGAAGGAACTCTCTGTGATCCACTGCTCAGCTCTGGCCTACATGCTGCAGATGTCAGAGGAGGTTCTGGATGAGTTGGACCTGGAGAAGTACAACACATCAGAGGAGGGACGACggagactgattccagctgtgaGGAACTGCAGAAAGGCTCGGATTGTTAACTGTGCACTCTCTGAGACTGACTGTAAAGTTgtggcctcagctctgaagtccaacccctcccatctgagagagctggacctgaacAACCTGAAGGATTCAGCAGAAGAGTGTCTCTGTGCTGGACTGCAGAGTCCaaactgtagactggagactctgagactgattggctgtaatctgtcagagagaagctgtgaagctctgtcctcagtactcagctcccagtcctctagtctgagagagctggacctgagtaacaacaacctacacgattcaggagggaagctgatctctgatggactgaagagtccacactgcagactggagactctcagtctgtcaggctgtctgatctcagaggaaggctgttcttctctggtctcagctctgagctccaacccctcccatctgagagagctggacctgagctacaatcatccaggagactcaggtGTGAAGCTACTGTCAGAGGGACTGGAGGATCctctctggagactggacactctcagggtggagcctgctggagtcagatggttgacaccaggtctgaggaagtattcctgtgaactcacactggacacaaacacagtgaacagaaacctcaaactgtctgacaacaacaggaaggtgacattaGTGAAGGAgtatcagccatatcctgatcatccagagaggtttgactacTGGTgtcctcagctgctgtgtagagatggtctgactggtcgctgttactgggaggtagagaggagaggaggggttgatatatcagtgagttacagaggaatcaggaggagaggagacagtggtgactgtgtgtttggaggTAATgttcagtcctggagtctgatctGCTCTGGTCGTGGTTACTATGTCCATCACAATAACAGAGTaacatccatctcctcctcctctgcctctggtagagtagcagtgtatgtggactgtcctgctggctctctgtccttctacacagtctcctctgactctctgaTCCACAtctacaccttcaacaccacattcactcagacTCTCTATCCTGGGTTTGGGTTCAGGTCCTGGTCTCCGGGTgactcagtgtctctgtgtcctctgtaggacggagagtctcctcctgtttgtcactgctgatcagttgagtctgtacaggatcacactaacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20909 lncRNA upstream 39610 8906730 ~ 8996926 (+) False LOC120543609
TU21021 lncRNA upstream 84521 8950262 ~ 8952015 (+) True G15543
TU20974 lncRNA upstream 110038 8924369 ~ 8926498 (+) True G15516
TU20970 lncRNA upstream 120293 8902835 ~ 8916243 (+) True G15514
TU20962 lncRNA upstream 124677 8751618 ~ 8911859 (+) False G15513
TU21036 lncRNA downstream 3476 9082032 ~ 9091968 (+) False G15552
TU21055 lncRNA downstream 40081 9118637 ~ 9119355 (+) True G15567
TU21060 lncRNA downstream 94276 9172832 ~ 9175805 (+) True G15571
XR_005636455.1 lncRNA downstream 151141 9229697 ~ 9233965 (+) True LOC120544104
TU21079 lncRNA downstream 179870 9258426 ~ 9273836 (+) True G15575
XM_039777493.1 mRNA upstream 227561 8796360 ~ 8808975 (+) False LOC120544007
XM_039777085.1 mRNA upstream 415428 8581479 ~ 8621108 (+) True LOC120543817
XM_039777099.1 mRNA upstream 469949 8547618 ~ 8566587 (+) True rnf168
XM_039776897.1 mRNA upstream 566776 8429225 ~ 8469760 (+) True LOC120543718
XM_039776949.1 mRNA upstream 614200 8399400 ~ 8422336 (+) True nyap2a
XM_039777153.1 mRNA downstream 180521 9259077 ~ 9275432 (+) True mindy4b
XM_039788297.1 mRNA downstream 204908 9283464 ~ 9301261 (+) True LOC120551113
XM_039777059.1 mRNA downstream 230643 9309199 ~ 9315322 (+) True LOC120543803
XM_039777036.1 mRNA downstream 230651 9309207 ~ 9329512 (+) False LOC120543792
XM_039777044.1 mRNA downstream 246407 9324963 ~ 9329512 (+) True LOC120543792
TU21004 other upstream 106266 8926592 ~ 8930270 (+) True G15540
TU20986 other upstream 185665 8849501 ~ 8850871 (+) True G15525
XR_005636425.1 other upstream 227707 8796070 ~ 8808829 (+) False LOC120544007
XR_005636424.1 other upstream 227707 8796084 ~ 8808829 (+) False LOC120544007
XR_005636426.1 other upstream 227766 8796070 ~ 8808770 (+) True LOC120544007
TU21053 other downstream 35286 9113842 ~ 9122292 (+) True G15565
TU21065 other downstream 194343 9272899 ~ 9354628 (+) True G15572
TU21111 other downstream 295598 9374154 ~ 9378204 (+) True G15605
TU21147 other downstream 379922 9458478 ~ 9459217 (+) True G15628
TU21177 other downstream 520404 9598960 ~ 9669529 (+) True G15640

Expression Profile