RNA id: TU20952


Basic Information

Item Value
RNA id TU20952
length 2297
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id G15507
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8690012 ~ 8700884 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAGAATGTTTTATTTGCCAAAAGGCTGAAATGACTCAGCGGTTTCTCTTGTGTGTGATTAAGGCTTCAGACAGCAATCGCTGATAtgtttaagacattttaataaatgaacAGTTAGTTTGGTCCTTTAAAGACAGCGCCACTCAGGAGCGTCTCTGATTGGTTCAGGAGCGTCTATGTCTCCGCCCCATCGTTACTTTTTACCACTTCCTCCAAATATCAGCTGCAGTTCATACAGGAAATAAATATCTTTTAGTACAAAAGTTAATGTTTCTAGAAAGAGTTAAAGGTTCTGCTGCGTCCAGAGGAGCTTGTGATTGGTCGGCCGGTCAgcggggtcaaaggtcacacgGAGCCGACTGGATCCTTCTGTCCTCTCATGTAGAACCCGGGCCGGCTGGGTTTCAATCCTTGAGGTTgtccaaagacaaaaacatcctACCGTAAAAAAGTCTAAAGTTCAAAAGGGACAAGCATTacaaaaagcgccaaaaaaaatgccaaagaaGCACCCAAAACACGGGCAAAAAAGGGTTAAAGAAGCACCCAAAAAAGGATTGAAAAAACGCTGAAAAAGGGTTAAAGAACGGTTAAAAaaaactaggggtggtacggttcatgaaaaaacacccgaaccgctcggttcgctagtctcggttcggagcgtgtgtgtaccgcacggttcgtcagtacactgttaatggtcactaacctcttactgccgtagtgcccactttatacacctatgttaaaacacttactggaaatgacgagcgggatgggcgtgacaaacgcaacccatggcagctgattggacgattgcgtcacatgggtctggctggtcccaaatttcaaagccagactgtcatggcggctcgttcagaatacgatctcatattgtactaaaatagttcaccgaaacgtgtttctgaaaacattttaagcgagaaataggccatgcagttgctgaatctgtcttcatttcagatcgacaaaggtcagtttaacagattttcatcagattttgagagacaccgtgccgaccgctcctcaagtggagtggcgCACTGCtggtcacgtcacctgcagagatgggagagaggctgcccagagctggaggatgcgccagcgtcgtttatagtctggtgtgtgggaacattttggatttcacgttacctatgatgaaataaaacaatatagaactgccactgtgtgcacgttttgtgcaacatgcattcaatatgcaaattttagctatatgctgaagtatattctggagtgataaagaaaaaaataataaccgtactgaaccgaaaaccgtgaccctaaaaccgtgatacgaaccgaaccgtgggttttgtgaaccgtaccacccctaaaaaaaaaacttaaaaaactgtcaaaaagcGCCAGAAAAAGCGTCCAAAGTGTTAAAAGGGTAATAAAACAGCATCAAAAGCTTCAAAGGAAAAGGAGTTTGTGTGGAGGTTGGTGTGGTCactgaagacagacagaaagacagaaagacagaaagacatgaagacagaaagacagaaagacatgaagacagaaagacatgaagacagaaagacatgaagacagaaagacatgAAGACAGATTCTGCAGATTCTAAAGAAATGAGACCAAAGGGAGAACGTGAACGCGTGTCCTCTCCACACAGAGAGTCTCTGACTCGGCAGACTTGTTCTAAACGTTCTGTTTGGGTCTGAAGGTAAGACAATGTCAATAAAGGTTTAAAAGTCTCTGGTGGCGGTGGATCCATGTTAGGCCCCGCCCTCTCCGCCTCCCGGGTGAGATGACAAGGCACTAGCGGGTCCTGGTATTGGTCCAATCACAGCGAGCGTCAGATGTGATGTCACAGCATGTGGCTGTGTTCAGGGTCAGAGGAAACGTCCGTTATCACATCGCTGCATCTGACGGCGTCTTCAGGCCTCGCTGGCGCTGCTGTTCCTGTTGATCTCTCGGATTCCCTGAAGGATCCTCTTAATGTGACCTACTTTAGTTACACCCagatcctacacacacacacacacacacacatagacagacacacacacacacacacacacacacacacacacacacacacagagacacacacacacacacacacacagagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacacacacacacacacacacacagagacacacacacacacacacacacacacaaagagacacacacacacaaacacatacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20943 lncRNA upstream 51589 8587277 ~ 8638423 (+) True G15499
TU20894 lncRNA upstream 68358 8620854 ~ 8621654 (+) False LOC120543817
TU20896 lncRNA upstream 68358 8620854 ~ 8621654 (+) False LOC120543817
TU20941 lncRNA upstream 87742 8579871 ~ 8602270 (+) True G15497
TU20942 lncRNA upstream 93613 8586383 ~ 8596399 (+) True G15498
TU20962 lncRNA downstream 50734 8751618 ~ 8911859 (+) False G15513
TU20964 lncRNA downstream 50734 8751618 ~ 8882044 (+) True G15513
TU20977 lncRNA downstream 50857 8751741 ~ 8754422 (+) True G15519
TU20926 lncRNA downstream 75754 8776638 ~ 8777948 (+) True G15485
TU20976 lncRNA downstream 99486 8800370 ~ 8829278 (+) True G15518
XM_039777085.1 mRNA upstream 68904 8581479 ~ 8621108 (+) True LOC120543817
XM_039777099.1 mRNA upstream 123425 8547618 ~ 8566587 (+) True rnf168
XM_039776897.1 mRNA upstream 220252 8429225 ~ 8469760 (+) True LOC120543718
XM_039776949.1 mRNA upstream 267676 8399400 ~ 8422336 (+) True nyap2a
XM_039788241.1 mRNA upstream 382802 8244631 ~ 8307210 (+) True LOC120551081
XM_039777493.1 mRNA downstream 95476 8796360 ~ 8808975 (+) False LOC120544007
XM_039776753.1 mRNA downstream 335652 9036536 ~ 9078556 (+) True LOC120543609
XM_039777153.1 mRNA downstream 558193 9259077 ~ 9275432 (+) True mindy4b
XM_039788297.1 mRNA downstream 582580 9283464 ~ 9301261 (+) True LOC120551113
XM_039777059.1 mRNA downstream 608315 9309199 ~ 9315322 (+) True LOC120543803
TU20798 other upstream 517521 8170696 ~ 8172491 (+) True G15415
TU20801 other upstream 518237 8170696 ~ 8171775 (+) False G15415
TU20559 other upstream 846355 7833323 ~ 7843657 (+) False rffl
TU20560 other upstream 846355 7833478 ~ 7843657 (+) False rffl
TU20561 other upstream 846355 7836049 ~ 7843657 (+) False rffl
XR_005636425.1 other downstream 95186 8796070 ~ 8808829 (+) False LOC120544007
XR_005636426.1 other downstream 95186 8796070 ~ 8808770 (+) True LOC120544007
XR_005636424.1 other downstream 95200 8796084 ~ 8808829 (+) False LOC120544007
TU20986 other downstream 148617 8849501 ~ 8850871 (+) True G15525
TU21004 other downstream 225708 8926592 ~ 8930270 (+) True G15540

Expression Profile