RNA id: TU20977


Basic Information

Item Value
RNA id TU20977
length 322
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G15519
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8751741 ~ 8754422 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtctgtgtgtgttttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtctgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtattatgtgtgtatgtgtgtgtatgtgtgtgtgtgtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20933 lncRNA upstream 49552 8512655 ~ 8702189 (+) True G15491
TU20952 lncRNA upstream 50857 8690012 ~ 8700884 (+) True G15507
TU20951 lncRNA upstream 59197 8690012 ~ 8692544 (+) False G15507
TU20943 lncRNA upstream 113318 8587277 ~ 8638423 (+) True G15499
TU20894 lncRNA upstream 130087 8620854 ~ 8621654 (+) False LOC120543817
TU20926 lncRNA downstream 22216 8776638 ~ 8777948 (+) True G15485
TU20976 lncRNA downstream 45948 8800370 ~ 8829278 (+) True G15518
TU20982 lncRNA downstream 79498 8833920 ~ 8834390 (+) True G15524
TU20983 lncRNA downstream 79498 8833920 ~ 8834390 (+) False G15524
TU20965 lncRNA downstream 119520 8873942 ~ 8882044 (+) False G15513
XM_039777085.1 mRNA upstream 130633 8581479 ~ 8621108 (+) True LOC120543817
XM_039777099.1 mRNA upstream 185154 8547618 ~ 8566587 (+) True rnf168
XM_039776897.1 mRNA upstream 281981 8429225 ~ 8469760 (+) True LOC120543718
XM_039776949.1 mRNA upstream 329405 8399400 ~ 8422336 (+) True nyap2a
XM_039788241.1 mRNA upstream 444531 8244631 ~ 8307210 (+) True LOC120551081
XM_039777493.1 mRNA downstream 41938 8796360 ~ 8808975 (+) False LOC120544007
XM_039776753.1 mRNA downstream 282114 9036536 ~ 9078556 (+) True LOC120543609
XM_039777153.1 mRNA downstream 504655 9259077 ~ 9275432 (+) True mindy4b
XM_039788297.1 mRNA downstream 529042 9283464 ~ 9301261 (+) True LOC120551113
XM_039777059.1 mRNA downstream 554777 9309199 ~ 9315322 (+) True LOC120543803
TU20798 other upstream 579250 8170696 ~ 8172491 (+) True G15415
TU20801 other upstream 579966 8170696 ~ 8171775 (+) False G15415
TU20559 other upstream 908084 7833323 ~ 7843657 (+) False rffl
TU20560 other upstream 908084 7833478 ~ 7843657 (+) False rffl
TU20561 other upstream 908084 7836049 ~ 7843657 (+) False rffl
XR_005636425.1 other downstream 41648 8796070 ~ 8808829 (+) False LOC120544007
XR_005636426.1 other downstream 41648 8796070 ~ 8808770 (+) True LOC120544007
XR_005636424.1 other downstream 41662 8796084 ~ 8808829 (+) False LOC120544007
TU20986 other downstream 95079 8849501 ~ 8850871 (+) True G15525
TU21004 other downstream 172170 8926592 ~ 8930270 (+) True G15540

Expression Profile