RNA id: TU21033


Basic Information

Item Value
RNA id TU21033
length 565
RNA type TUCP
GC content 0.54
exon number 3
gene id G15552
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8994181 ~ 9091968 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtttgtgtgtgtatgtctgtgagtgtgtgtgtgtgagagagagagtgtgtgtctctgtgtgtgtgtatgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgattgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtctctctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgcgttgtgtgtgtctgtctctgtgtgtgattgtgtttgtgtgtgtgtgagtgtgtgtctgtgtctgtgtgtgtgcgttgtgtgtgtctgtctctgtgtgtgattgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtaaagtgagACAACTCCAATGTTTCTGATAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21021 lncRNA upstream 42166 8950262 ~ 8952015 (+) True G15543
TU20974 lncRNA upstream 67683 8924369 ~ 8926498 (+) True G15516
TU20970 lncRNA upstream 77938 8902835 ~ 8916243 (+) True G15514
TU20975 lncRNA upstream 94509 8899219 ~ 8899672 (+) True G15517
XR_005636454.1 lncRNA upstream 98926 8894477 ~ 8895255 (+) False LOC120544096
TU20911 lncRNA downstream 16518 9057821 ~ 9098564 (+) False LOC120543609
TU21036 lncRNA downstream 40729 9082032 ~ 9091968 (+) False G15552
TU21055 lncRNA downstream 77334 9118637 ~ 9119355 (+) True G15567
TU21060 lncRNA downstream 131529 9172832 ~ 9175805 (+) True G15571
XR_005636455.1 lncRNA downstream 188394 9229697 ~ 9233965 (+) True LOC120544104
XM_039777493.1 mRNA upstream 185206 8796360 ~ 8808975 (+) False LOC120544007
XM_039777085.1 mRNA upstream 373073 8581479 ~ 8621108 (+) True LOC120543817
XM_039777099.1 mRNA upstream 427594 8547618 ~ 8566587 (+) True rnf168
XM_039776897.1 mRNA upstream 524421 8429225 ~ 8469760 (+) True LOC120543718
XM_039776949.1 mRNA upstream 571845 8399400 ~ 8422336 (+) True nyap2a
XM_039777153.1 mRNA downstream 217774 9259077 ~ 9275432 (+) True mindy4b
XM_039788297.1 mRNA downstream 242161 9283464 ~ 9301261 (+) True LOC120551113
XM_039777059.1 mRNA downstream 267896 9309199 ~ 9315322 (+) True LOC120543803
XM_039777036.1 mRNA downstream 267904 9309207 ~ 9329512 (+) False LOC120543792
XM_039777044.1 mRNA downstream 283660 9324963 ~ 9329512 (+) True LOC120543792
TU21004 other upstream 63911 8926592 ~ 8930270 (+) True G15540
TU20986 other upstream 143310 8849501 ~ 8850871 (+) True G15525
XR_005636425.1 other upstream 185352 8796070 ~ 8808829 (+) False LOC120544007
XR_005636424.1 other upstream 185352 8796084 ~ 8808829 (+) False LOC120544007
XR_005636426.1 other upstream 185411 8796070 ~ 8808770 (+) True LOC120544007
TU21053 other downstream 72539 9113842 ~ 9122292 (+) True G15565
TU21065 other downstream 231596 9272899 ~ 9354628 (+) True G15572
TU21111 other downstream 332851 9374154 ~ 9378204 (+) True G15605
TU21147 other downstream 417175 9458478 ~ 9459217 (+) True G15628
TU21177 other downstream 557657 9598960 ~ 9669529 (+) True G15640

Expression Profile