RNA id: TU21192


Basic Information

Item Value
RNA id TU21192
length 1630
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id G15653
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9627807 ~ 9630249 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cctattctggtacaaccttaaaatacaattatgaacctgaaaatcagCATAACATGGGTGCTTTAatgggccgtgttcatttcacagatttctgtgagatcaggttgaaaTTTCAAAAACAGTCAAAATGAGCGTCATGGCTGTTCTAGTGTTGAGAATGTGCATGAGAACAGATAGTTTGCACATATTTCCATAACTTCCCACGTATTTTTGCACACACCCACAAGCACTCCCTTcgcacagacacatgcacgaTTTTGTTTCAGGATTGTTTCTATTTCCTACACTTTTGGCTGCTTTGAacacatctcctcactatctgctagctgcctgtcccctgaacacactgtaaaaaatatcactatctgctagctacctgtcccctgaacacgctgtaaaaaatatctcactatctgctagctacctgtcccctgaacacactgtaaaaaatatctcactatctgctagctgcctgtcccctgaacacgctgtaaaaaatatctcactatctgctagctacctgtcccctgaacacgctgtaaaaaatatctcactatctgctagctacctgtcccctgaacacgctgtaaaaaatatctcactatctgctagctgcctgtcccctgaacacactgtaaaaaatatctcactatctgctagctgcctgtcccctgaacacactgtaaaaaatatctcactatctgctagctacctgtcccctgaacacactgtaaaaaatatctcactatctgctagctacctgtcccctgaacacactgtaaaaaatatctcactatctgctagctacctgtcccctgaacacactgtaaaaaatatctcactatctgctagctacctgtcccctgaacacactgtaaaaaatatctcactatctgctagctacctgtcccctgaacacgctgtaaaaaacatctcaccCAACAtggcttagagcaccttttaaacgTATACGTGCACTCTTTGAGCTTTGTACTTTCCTCACGATAACAGATAAAGAGTTTAATCGTATCGTATATATTTGAATTTGTATTTCTATTTCGTGGCCTTTTTGTAAAAGCAGCTTTTTGGTAACGAAGCCTTTGTATCAGCAGTCTGAATCTGTCGTgtgattatttttgttataaattaaacagctgatgtgatTCCTGTGAGCTCtgcatgatgatgatggtgatgatgatgatgatgatgatgatgatgatggtgatgatgatgatgatgatgatgatgatgatggagtcTTGTGGTTATTTCTATATACTGGGAATGTGTTTCATAAAGCCTCGCATGGCATCACAAACTGCTAAACTTTCTACGAATGTTTTGActatttctttatatatatgtttttttaaggCGATTAAAACTTGGgtaagaaagacagacaggcagacagacagatagatagacaggcagacaggcagatagacagagagacaggcagacagacagatagatagacaggcagacaggcagatagacagagagacaggcaggcagatagatagatagatagatagatagatagatagatagatagatagatagacagacagacagacagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21197 lncRNA upstream 20762 9606699 ~ 9607045 (+) True G15657
TU21081 lncRNA upstream 27950 9465146 ~ 9599857 (+) True G15577
TU21178 lncRNA upstream 28588 9598313 ~ 9599219 (+) False G15640
TU21137 lncRNA upstream 37664 9589607 ~ 9590143 (+) True G15619
TU21160 lncRNA upstream 91214 9533530 ~ 9536593 (+) True G15637
TU21200 lncRNA downstream 33752 9664001 ~ 9664312 (+) True G15660
TU21203 lncRNA downstream 49918 9680167 ~ 9680904 (+) True G15662
TU21212 lncRNA downstream 54767 9685016 ~ 9685361 (+) True G15666
TU21216 lncRNA downstream 62154 9692403 ~ 9693478 (+) True G15668
TU21234 lncRNA downstream 181597 9811846 ~ 9812132 (+) True G15684
XM_039783389.1 mRNA upstream 2026 9603260 ~ 9625781 (+) True LOC120547748
XM_039788344.1 mRNA upstream 73191 9544019 ~ 9554616 (+) True LOC120551143
XM_039777519.1 mRNA upstream 188976 9434649 ~ 9438831 (+) True serp1
XM_039777024.1 mRNA upstream 288639 9331567 ~ 9339168 (+) True LOC120543784
XM_039777044.1 mRNA upstream 298295 9324963 ~ 9329512 (+) True LOC120543792
XM_039788367.1 mRNA downstream 4025 9634274 ~ 9652831 (+) True LOC120551159
XM_039780891.1 mRNA downstream 120382 9750631 ~ 9797726 (+) True clip3
XM_039780892.1 mRNA downstream 120382 9750631 ~ 9797726 (+) False clip3
XM_039788424.1 mRNA downstream 323303 9953552 ~ 9976502 (+) True LOC120551195
XM_039779289.1 mRNA downstream 425745 10055994 ~ 10119839 (+) True si:ch211-137a8.4
TU21147 other upstream 168590 9458478 ~ 9459217 (+) True G15628
TU21111 other upstream 249603 9374154 ~ 9378204 (+) True G15605
TU21065 other upstream 273179 9272899 ~ 9354628 (+) True G15572
TU21053 other upstream 505515 9113842 ~ 9122292 (+) True G15565
TU21037 other upstream 545399 9040559 ~ 9082408 (+) False G15552
TU21174 other downstream 1142 9631391 ~ 9636479 (+) False LOC120551159
TU21176 other downstream 4055 9634304 ~ 9636479 (+) False LOC120551159
TU21175 other downstream 4194 9634443 ~ 9636479 (+) False LOC120551159
TU21180 other downstream 14888 9645137 ~ 9668479 (+) True G15642
unassigned_transcript_86 other downstream 239584 9869833 ~ 9869924 (+) True trnar-ucu_10

Expression Profile