RNA id: TU21197


Basic Information

Item Value
RNA id TU21197
length 221
lncRNA type intronic
GC content 0.57
exon number 2
gene id G15657
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9606699 ~ 9607045 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggtgcgttctgggcgtgctggtcttacagggaggtgtgttcaggtgcgttctgggcgtgctggtcttacagggaggtgtgttcaggtgcattctgggcgtgctggtcttacagggaggtgtgttcaggttcattctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21081 lncRNA upstream 6842 9465146 ~ 9599857 (+) True G15577
TU21178 lncRNA upstream 7480 9598313 ~ 9599219 (+) False G15640
TU21137 lncRNA upstream 16556 9589607 ~ 9590143 (+) True G15619
TU21160 lncRNA upstream 70106 9533530 ~ 9536593 (+) True G15637
TU21159 lncRNA upstream 74242 9531026 ~ 9532457 (+) True G15636
TU21195 lncRNA downstream 12207 9619252 ~ 9635945 (+) True G15655
TU21191 lncRNA downstream 20762 9627807 ~ 9630249 (+) False G15653
TU21192 lncRNA downstream 20762 9627807 ~ 9630249 (+) True G15653
TU21200 lncRNA downstream 56956 9664001 ~ 9664312 (+) True G15660
TU21203 lncRNA downstream 73122 9680167 ~ 9680904 (+) True G15662
XM_039788344.1 mRNA upstream 52083 9544019 ~ 9554616 (+) True LOC120551143
XM_039777519.1 mRNA upstream 167868 9434649 ~ 9438831 (+) True serp1
XM_039777024.1 mRNA upstream 267531 9331567 ~ 9339168 (+) True LOC120543784
XM_039777036.1 mRNA upstream 277187 9309207 ~ 9329512 (+) False LOC120543792
XM_039788367.1 mRNA downstream 27229 9634274 ~ 9652831 (+) True LOC120551159
XM_039780891.1 mRNA downstream 143586 9750631 ~ 9797726 (+) True clip3
XM_039780892.1 mRNA downstream 143586 9750631 ~ 9797726 (+) False clip3
XM_039788424.1 mRNA downstream 346507 9953552 ~ 9976502 (+) True LOC120551195
XM_039779289.1 mRNA downstream 448949 10055994 ~ 10119839 (+) True si:ch211-137a8.4
TU21147 other upstream 147482 9458478 ~ 9459217 (+) True G15628
TU21111 other upstream 228495 9374154 ~ 9378204 (+) True G15605
TU21065 other upstream 252071 9272899 ~ 9354628 (+) True G15572
TU21053 other upstream 484407 9113842 ~ 9122292 (+) True G15565
TU21037 other upstream 524291 9040559 ~ 9082408 (+) False G15552
TU21174 other downstream 24346 9631391 ~ 9636479 (+) False LOC120551159
TU21176 other downstream 27259 9634304 ~ 9636479 (+) False LOC120551159
TU21175 other downstream 27398 9634443 ~ 9636479 (+) False LOC120551159
TU21180 other downstream 38092 9645137 ~ 9668479 (+) True G15642
unassigned_transcript_86 other downstream 262788 9869833 ~ 9869924 (+) True trnar-ucu_10

Expression Profile