RNA id: TU21200


Basic Information

Item Value
RNA id TU21200
length 221
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G15660
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9664001 ~ 9664312 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgagagagagtaggtgagagagagtgtgtgtgtctgtgtgtgagagcgagagagagagtgtgagagagagagtgtgagagagagtgtgtgtgtctgtgtgtgagagcgagagagagagacacacacagtgtgaaAGACTGGGAATGATGCATTTAATCCTCCATGATTGtgttctgtttgtgtctttttttggcAGGAGCCAGCAGTTTTGGGATTGAAAA

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21162 lncRNA upstream 8338 9600506 ~ 9655663 (+) True G15638
TU21153 lncRNA upstream 10047 9518031 ~ 9653954 (+) True G15632
TU21179 lncRNA upstream 26980 9539845 ~ 9637021 (+) True G15641
TU21195 lncRNA upstream 28056 9619252 ~ 9635945 (+) True G15655
TU21191 lncRNA upstream 33752 9627807 ~ 9630249 (+) False G15653
TU21203 lncRNA downstream 15855 9680167 ~ 9680904 (+) True G15662
TU21212 lncRNA downstream 20704 9685016 ~ 9685361 (+) True G15666
TU21216 lncRNA downstream 28091 9692403 ~ 9693478 (+) True G15668
TU21234 lncRNA downstream 147534 9811846 ~ 9812132 (+) True G15684
TU21271 lncRNA downstream 194148 9858460 ~ 9865893 (+) True G15713
XM_039788367.1 mRNA upstream 11170 9634274 ~ 9652831 (+) True LOC120551159
XM_039783389.1 mRNA upstream 38220 9603260 ~ 9625781 (+) True LOC120547748
XM_039788344.1 mRNA upstream 109385 9544019 ~ 9554616 (+) True LOC120551143
XM_039777519.1 mRNA upstream 225170 9434649 ~ 9438831 (+) True serp1
XM_039777024.1 mRNA upstream 324833 9331567 ~ 9339168 (+) True LOC120543784
XM_039780891.1 mRNA downstream 86319 9750631 ~ 9797726 (+) True clip3
XM_039780892.1 mRNA downstream 86319 9750631 ~ 9797726 (+) False clip3
XM_039788424.1 mRNA downstream 289240 9953552 ~ 9976502 (+) True LOC120551195
XM_039779289.1 mRNA downstream 391682 10055994 ~ 10119839 (+) True si:ch211-137a8.4
XM_039779298.1 mRNA downstream 392557 10056869 ~ 10119839 (+) False si:ch211-137a8.4
TU21174 other upstream 27522 9631391 ~ 9636479 (+) False LOC120551159
TU21176 other upstream 27522 9634304 ~ 9636479 (+) False LOC120551159
TU21175 other upstream 27522 9634443 ~ 9636479 (+) False LOC120551159
TU21147 other upstream 204784 9458478 ~ 9459217 (+) True G15628
TU21111 other upstream 285797 9374154 ~ 9378204 (+) True G15605
unassigned_transcript_86 other downstream 205521 9869833 ~ 9869924 (+) True trnar-ucu_10
unassigned_transcript_87 other downstream 220201 9884513 ~ 9884604 (+) True trnar-ucu_11
TU21262 other downstream 221301 9885613 ~ 9944445 (+) False LOC120551195
TU21264 other downstream 295754 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other downstream 295754 9960066 ~ 9965774 (+) False LOC120551195

Expression Profile