RNA id: TU21263


Basic Information

Item Value
RNA id TU21263
length 928
lncRNA type sense_over
GC content 0.49
exon number 3
gene id LOC120551195
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9866710 ~ 10003372 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTACTGACTGGTGCTGAGAGTGAGCTAAGGCACGTTGTATTTCATTGCTGTGGTACTTCGTACTAATATGCATATgactatgaactgaactgaactgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtgtgtgtctgtctgtgtgtgtgtctgtctgtctgtctgtgtgtctgtctgtctgtgtgtgtgtctgtctgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtctgtctgtgtgtctgtctgtgtgtgtgtgtctgtctgtgtgtgtgtgtgtctgtgtgtcttctgtgtgtgtgtgtgtctgtctgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtgtgtgtgtctgtgtgtgtgtctgtctgtgtgtgtgtctgtctgtctgtgtgtgtgtgtctgtctgtgtgtgtgtctgtgtgtgttctgtctgtgtgtgtgtctgtctgtgtttgtgtgtctgtgtgtgtctgtgtgtctgtctgtgttgtgtctgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtctgtgtgtctgtctgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtctgtctgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21261 lncRNA upstream 9017 9885454 ~ 9944445 (+) False LOC120551195
TU21284 lncRNA upstream 17691 9874305 ~ 9935771 (+) False G15714
TU21274 lncRNA upstream 17691 9933905 ~ 9935771 (+) False G15714
TU21276 lncRNA upstream 17691 9933905 ~ 9935771 (+) False G15714
TU21278 lncRNA upstream 17691 9933905 ~ 9935771 (+) False G15714
TU21314 lncRNA downstream 35329 10004511 ~ 10004729 (+) True G15727
TU21725 lncRNA downstream 166326 10135508 ~ 10135731 (+) True G16031
TU21727 lncRNA downstream 169821 10139003 ~ 10166469 (+) True G16033
TU21739 lncRNA downstream 214511 10183693 ~ 10185685 (+) True G16044
TU21744 lncRNA downstream 219781 10188963 ~ 10195210 (+) True G16048
XM_039780891.1 mRNA upstream 155736 9750631 ~ 9797726 (+) True clip3
XM_039780892.1 mRNA upstream 155736 9750631 ~ 9797726 (+) False clip3
XM_039788367.1 mRNA upstream 300631 9634274 ~ 9652831 (+) True LOC120551159
XM_039783389.1 mRNA upstream 327681 9603260 ~ 9625781 (+) True LOC120547748
XM_039788344.1 mRNA upstream 398846 9544019 ~ 9554616 (+) True LOC120551143
XM_039779289.1 mRNA downstream 86812 10055994 ~ 10119839 (+) True si:ch211-137a8.4
XM_039779298.1 mRNA downstream 87687 10056869 ~ 10119839 (+) False si:ch211-137a8.4
XM_039787317.1 mRNA downstream 390207 10359389 ~ 10376811 (+) True LOC120550666
XM_039787324.1 mRNA downstream 390249 10359431 ~ 10376811 (+) False LOC120550666
XM_039784386.1 mRNA downstream 419050 10388232 ~ 10401550 (+) True zgc:101731
TU21262 other upstream 9017 9885613 ~ 9944445 (+) False LOC120551195
unassigned_transcript_87 other upstream 68858 9884513 ~ 9884604 (+) True trnar-ucu_11
unassigned_transcript_86 other upstream 83538 9869833 ~ 9869924 (+) True trnar-ucu_10
TU21180 other upstream 284983 9645137 ~ 9668479 (+) True G15642
TU21175 other upstream 316983 9634443 ~ 9636479 (+) False LOC120551159
TU21270 other downstream 33068 10002250 ~ 10003595 (+) True G15712
XR_005638446.1 other downstream 1587125 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 1588270 11557452 ~ 11557600 (+) True LOC120554442
XR_005638440.1 other downstream 1591209 11560391 ~ 11560539 (+) True LOC120554427
XR_005638430.1 other downstream 1593074 11562256 ~ 11562404 (+) True LOC120554420

Expression Profile