RNA id: TU21267


Basic Information

Item Value
RNA id TU21267
length 1167
RNA type TUCP
GC content 0.38
exon number 6
gene id LOC120551195
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9866710 ~ 10003372 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTGAACTCACCGTGAACACACGATCAAACTGTTTCCGTGAACTCACCGTGAACACACCATCAAACTGTTTCCGTGAACTCACCGTGAACTCACCGTGAACACACCATGAACGCACCGTGAACACACCGTGAACTCACCATCAAACTGTTTCACCGTGAACACACCGTGAACACACTGTGAACTCACCGTGAACTCACCGTGAACACACCATGAACGCACCGTGAACACACCGTGAACACACCATCAAACTGTTTCACCGTGAACACACCGTGAACACACCGTGAACTCACCGTGAACACACCATGAACGCACCGTGAACACACCGTGAACACACCATGAACGCACCGTGAACACACCGTGAACACACCGTGAACTCACCGTGAACACACCATGAACGCACCGTGAACACACCGTGAACACACCATGAACGCACCGTGAACACACCGTGAACACACCATCAAACTGTTTCCGTGAACTCACCATGAACTCACCGTGAACACACCATGAACTCACCGTGAACTCACCGTGAACACACCATGAACTCACCGTGAACACACCATGAACACACCGTGAACACACCGTGAACTCACCATCAAACTGTTTCTGCAGGGCGTCGAGGAAGAGGAGGCAGCTGCTGCCGGCTGAGACGCCGAAGAAAAGACATCCGTGGGTCACAGTACAGCCTGAACCCAACAAGACAGtggttCTGTTTGAAGCCTCGATGGAGTTCCTGGAGAATGTTGACGATGAAGAcgatgaagatgaagaagacGCCACGTCCTTCGTCACCGCCCCCCTCCTCCCAACGTTCCCGCCGGTCGCCATGGAGACGCTGCCGATGCGTTACGACCACGGCCGCAGGGAGGAGCAGGCGGTCGCCGTGGCGATGGGCGGGAGGCCGGCCGCCACGGCGACGAGGTTTGACTCCGCCCTGAAGGACTACTAcactctgagactcagagCGCTGTCGGATGGCGTGTTGGTCGACGCCAtcttcctccctcactcctcctcttcctcccctctcctccccccctccctcaccCCAACACCTGGACCTCCATCCTCTCACACGGAGccttctccacacacacacctcctccctccccagCCGACCTCATCAGCACGGCGGCCCAGCTGGCCAATCAGGCTGGTGTGTGTCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21265 lncRNA upstream 4583 9953462 ~ 9955483 (+) False LOC120551195
TU21292 lncRNA upstream 5876 9939821 ~ 9954190 (+) True G15719
TU21293 lncRNA upstream 5876 9939821 ~ 9954190 (+) False G15719
TU21294 lncRNA upstream 5876 9939821 ~ 9954190 (+) False G15719
TU21297 lncRNA upstream 6185 9947772 ~ 9953881 (+) False G15720
TU21300 lncRNA downstream 118 9965892 ~ 9966604 (+) True G15723
TU21301 lncRNA downstream 118 9965892 ~ 9966604 (+) False G15723
TU21302 lncRNA downstream 118 9965892 ~ 9966604 (+) False G15723
TU21303 lncRNA downstream 118 9965892 ~ 9966604 (+) False G15723
TU21304 lncRNA downstream 118 9965892 ~ 9966604 (+) False G15723
XM_039780891.1 mRNA upstream 162340 9750631 ~ 9797726 (+) True clip3
XM_039780892.1 mRNA upstream 162340 9750631 ~ 9797726 (+) False clip3
XM_039788367.1 mRNA upstream 307235 9634274 ~ 9652831 (+) True LOC120551159
XM_039783389.1 mRNA upstream 334285 9603260 ~ 9625781 (+) True LOC120547748
XM_039788344.1 mRNA upstream 405450 9544019 ~ 9554616 (+) True LOC120551143
XM_039779289.1 mRNA downstream 90220 10055994 ~ 10119839 (+) True si:ch211-137a8.4
XM_039779298.1 mRNA downstream 91095 10056869 ~ 10119839 (+) False si:ch211-137a8.4
XM_039787317.1 mRNA downstream 393615 10359389 ~ 10376811 (+) True LOC120550666
XM_039787324.1 mRNA downstream 393657 10359431 ~ 10376811 (+) False LOC120550666
XM_039784386.1 mRNA downstream 422458 10388232 ~ 10401550 (+) True zgc:101731
TU21262 other upstream 15621 9885613 ~ 9944445 (+) False LOC120551195
unassigned_transcript_87 other upstream 75462 9884513 ~ 9884604 (+) True trnar-ucu_11
unassigned_transcript_86 other upstream 90142 9869833 ~ 9869924 (+) True trnar-ucu_10
TU21180 other upstream 291587 9645137 ~ 9668479 (+) True G15642
TU21175 other upstream 323587 9634443 ~ 9636479 (+) False LOC120551159
TU21270 other downstream 36476 10002250 ~ 10003595 (+) True G15712
XR_005638446.1 other downstream 1590533 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 1591678 11557452 ~ 11557600 (+) True LOC120554442
XR_005638440.1 other downstream 1594617 11560391 ~ 11560539 (+) True LOC120554427
XR_005638430.1 other downstream 1596482 11562256 ~ 11562404 (+) True LOC120554420

Expression Profile