RNA id: TU21270


Basic Information

Item Value
RNA id TU21270
length 239
RNA type TUCP
GC content 0.46
exon number 2
gene id G15712
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 10002250 ~ 10003595 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctctgtgtatgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21263 lncRNA upstream 33068 9953462 ~ 9969182 (+) False LOC120551195
TU21300 lncRNA upstream 35646 9965892 ~ 9966604 (+) True G15723
TU21301 lncRNA upstream 35646 9965892 ~ 9966604 (+) False G15723
TU21302 lncRNA upstream 35646 9965892 ~ 9966604 (+) False G15723
TU21303 lncRNA upstream 35646 9965892 ~ 9966604 (+) False G15723
TU21314 lncRNA downstream 916 10004511 ~ 10004729 (+) True G15727
TU21725 lncRNA downstream 131913 10135508 ~ 10135731 (+) True G16031
TU21727 lncRNA downstream 135408 10139003 ~ 10166469 (+) True G16033
TU21739 lncRNA downstream 180098 10183693 ~ 10185685 (+) True G16044
TU21744 lncRNA downstream 185368 10188963 ~ 10195210 (+) True G16048
XM_039788424.1 mRNA upstream 25748 9953552 ~ 9976502 (+) True LOC120551195
XM_039780891.1 mRNA upstream 204524 9750631 ~ 9797726 (+) True clip3
XM_039780892.1 mRNA upstream 204524 9750631 ~ 9797726 (+) False clip3
XM_039788367.1 mRNA upstream 349419 9634274 ~ 9652831 (+) True LOC120551159
XM_039783389.1 mRNA upstream 376469 9603260 ~ 9625781 (+) True LOC120547748
XM_039779289.1 mRNA downstream 52399 10055994 ~ 10119839 (+) True si:ch211-137a8.4
XM_039779298.1 mRNA downstream 53274 10056869 ~ 10119839 (+) False si:ch211-137a8.4
XM_039787317.1 mRNA downstream 355794 10359389 ~ 10376811 (+) True LOC120550666
XM_039787324.1 mRNA downstream 355836 10359431 ~ 10376811 (+) False LOC120550666
XM_039784386.1 mRNA downstream 384637 10388232 ~ 10401550 (+) True zgc:101731
TU21264 other upstream 36476 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other upstream 36476 9960066 ~ 9965774 (+) False LOC120551195
TU21262 other upstream 57805 9885613 ~ 9944445 (+) False LOC120551195
unassigned_transcript_87 other upstream 117646 9884513 ~ 9884604 (+) True trnar-ucu_11
unassigned_transcript_86 other upstream 132326 9869833 ~ 9869924 (+) True trnar-ucu_10
XR_005638446.1 other downstream 1552712 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 1553857 11557452 ~ 11557600 (+) True LOC120554442
XR_005638440.1 other downstream 1556796 11560391 ~ 11560539 (+) True LOC120554427
XR_005638430.1 other downstream 1558661 11562256 ~ 11562404 (+) True LOC120554420
TU22150 other downstream 1890909 11894504 ~ 11900873 (+) True G16267

Expression Profile