RNA id: TU21282


Basic Information

Item Value
RNA id TU21282
length 546
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id G15714
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9874305 ~ 9935771 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gccacctacaggtctcgttacacctccacctacaggtctcctTACAGCGCCtcctacaggtctggttacaccgccacctacaggtctcgttacaccgccacctacaggtctcgttacaccaccacctacaggtctcgttacacctccacctacaggtctcgttacaccaccacctacaggtctcgttacacctccacctacaggtctcgttacaccaccacctacaggtctggttacacctccacctacaagTCTCACTCTtcagtaaaccaatcagaattggccACGAAAtcatgatccaatcacagaATGACATGTTGCTTTAAATGTCCCTCTCTCGCTATCAGCTGTCTTCTCAGGCAAAGTGCATTGGAGCTCCTGGTTGCCTCTTCGCTATCACCAGTGTCTGGGCTCCATTGGGGGGGAATAATGTCTGTTTCTCTGCCCCTTTACATAGTTACTATGATGGAGTTTAAGCCCCAAAGACTCTGGACATATCATGTATCCGTGTTCATATCATGTATCCGTGTTCATATCATGTATCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21291 lncRNA upstream 13986 9919583 ~ 9919919 (+) True G15718
TU21268 lncRNA upstream 66554 9866843 ~ 9867351 (+) True G15710
TU21271 lncRNA upstream 68012 9858460 ~ 9865893 (+) True G15713
TU21234 lncRNA upstream 121773 9811846 ~ 9812132 (+) True G15684
TU21216 lncRNA upstream 240427 9692403 ~ 9693478 (+) True G15668
TU21292 lncRNA downstream 4050 9939821 ~ 9954190 (+) True G15719
TU21293 lncRNA downstream 4050 9939821 ~ 9954190 (+) False G15719
TU21294 lncRNA downstream 4050 9939821 ~ 9954190 (+) False G15719
TU21296 lncRNA downstream 12001 9947772 ~ 9965535 (+) True G15720
TU21297 lncRNA downstream 12001 9947772 ~ 9953881 (+) False G15720
XM_039780891.1 mRNA upstream 136179 9750631 ~ 9797726 (+) True clip3
XM_039780892.1 mRNA upstream 136179 9750631 ~ 9797726 (+) False clip3
XM_039788367.1 mRNA upstream 281074 9634274 ~ 9652831 (+) True LOC120551159
XM_039783389.1 mRNA upstream 308124 9603260 ~ 9625781 (+) True LOC120547748
XM_039788344.1 mRNA upstream 379289 9544019 ~ 9554616 (+) True LOC120551143
XM_039788424.1 mRNA downstream 17781 9953552 ~ 9976502 (+) True LOC120551195
XM_039779289.1 mRNA downstream 120223 10055994 ~ 10119839 (+) True si:ch211-137a8.4
XM_039779298.1 mRNA downstream 121098 10056869 ~ 10119839 (+) False si:ch211-137a8.4
XM_039787317.1 mRNA downstream 423618 10359389 ~ 10376811 (+) True LOC120550666
XM_039787324.1 mRNA downstream 423660 10359431 ~ 10376811 (+) False LOC120550666
unassigned_transcript_87 other upstream 49301 9884513 ~ 9884604 (+) True trnar-ucu_11
unassigned_transcript_86 other upstream 63981 9869833 ~ 9869924 (+) True trnar-ucu_10
TU21180 other upstream 265426 9645137 ~ 9668479 (+) True G15642
TU21176 other upstream 297426 9634304 ~ 9636479 (+) False LOC120551159
TU21264 other downstream 24295 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other downstream 24295 9960066 ~ 9965774 (+) False LOC120551195
TU21270 other downstream 66479 10002250 ~ 10003595 (+) True G15712
XR_005638446.1 other downstream 1620536 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 1621681 11557452 ~ 11557600 (+) True LOC120554442

Expression Profile