RNA id: TU21284


Basic Information

Item Value
RNA id TU21284
length 575
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G15714
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9874305 ~ 9935771 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acctacaggtctcgttacaccgttacaccgccacctacaggtctcgttacaccaccacctacaggtctcgttacacctccacctacaggtctcgttacaccaccacctacaggtctggttacacctccacctacaggtctcgttacaccaccacctacaggtctcgttacacctccacctacaggtctcgttacagcgccacctacaggtctcgttacacctccacctacaggtctcgttacaccaccacctacaggtctggttacacctccacctacaagTCTCACTCTtcagtaaaccaatcagaattggccACGAAAtcatgatccaatcacagaATGACATGTTGCTTTAAATGTCCCTCTCTCGCTATCAGCTGTCTTCTCAGGCAAAGTGCATTGGAGCTCCTGGTTGCCTCTTCGCTATCACCAGTGTCTGGGCTCCATTGGGGGGGAATAATGTCTGTTTCTCTGCCCCTTTACATAGTTACTATGATGGAGTTTAAGCCCCAAAGACTCTGGACATATCATGTATCCGTGTTCATATCATGTATCCGTGTTCATATCATGTATCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21268 lncRNA upstream 6954 9866843 ~ 9867351 (+) True G15710
TU21271 lncRNA upstream 8412 9858460 ~ 9865893 (+) True G15713
TU21234 lncRNA upstream 62173 9811846 ~ 9812132 (+) True G15684
TU21216 lncRNA upstream 180827 9692403 ~ 9693478 (+) True G15668
TU21212 lncRNA upstream 188944 9685016 ~ 9685361 (+) True G15666
TU21292 lncRNA downstream 4050 9939821 ~ 9954190 (+) True G15719
TU21293 lncRNA downstream 4050 9939821 ~ 9954190 (+) False G15719
TU21294 lncRNA downstream 4050 9939821 ~ 9954190 (+) False G15719
TU21296 lncRNA downstream 12001 9947772 ~ 9965535 (+) True G15720
TU21297 lncRNA downstream 12001 9947772 ~ 9953881 (+) False G15720
XM_039780891.1 mRNA upstream 76579 9750631 ~ 9797726 (+) True clip3
XM_039780892.1 mRNA upstream 76579 9750631 ~ 9797726 (+) False clip3
XM_039788367.1 mRNA upstream 221474 9634274 ~ 9652831 (+) True LOC120551159
XM_039783389.1 mRNA upstream 248524 9603260 ~ 9625781 (+) True LOC120547748
XM_039788344.1 mRNA upstream 319689 9544019 ~ 9554616 (+) True LOC120551143
XM_039788424.1 mRNA downstream 17781 9953552 ~ 9976502 (+) True LOC120551195
XM_039779289.1 mRNA downstream 120223 10055994 ~ 10119839 (+) True si:ch211-137a8.4
XM_039779298.1 mRNA downstream 121098 10056869 ~ 10119839 (+) False si:ch211-137a8.4
XM_039787317.1 mRNA downstream 423618 10359389 ~ 10376811 (+) True LOC120550666
XM_039787324.1 mRNA downstream 423660 10359431 ~ 10376811 (+) False LOC120550666
unassigned_transcript_86 other upstream 4381 9869833 ~ 9869924 (+) True trnar-ucu_10
TU21177 other upstream 204776 9598960 ~ 9669529 (+) True G15640
TU21180 other upstream 205826 9645137 ~ 9668479 (+) True G15642
TU21174 other upstream 237826 9631391 ~ 9636479 (+) False LOC120551159
TU21176 other upstream 237826 9634304 ~ 9636479 (+) False LOC120551159
TU21264 other downstream 24295 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other downstream 24295 9960066 ~ 9965774 (+) False LOC120551195
TU21270 other downstream 66479 10002250 ~ 10003595 (+) True G15712
XR_005638446.1 other downstream 1620536 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 1621681 11557452 ~ 11557600 (+) True LOC120554442

Expression Profile