RNA id: TU21292


Basic Information

Item Value
RNA id TU21292
length 489
lncRNA type sense_over
GC content 0.46
exon number 2
gene id G15719
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9939821 ~ 9954190 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aatagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatatacataaataacacacacacacacacacacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacatatacacacacacacacacacactacacacacatacacacacacacacacatacacacatacacacacacacatatacacacacacatatatacacacacacacacacatatacacacatatacacacacacacacagagacacacacacacacacacacacacacccagacacacacacacacacacacacacacacagagacacacacagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21284 lncRNA upstream 4050 9874305 ~ 9935771 (+) False G15714
TU21274 lncRNA upstream 4050 9933905 ~ 9935771 (+) False G15714
TU21276 lncRNA upstream 4050 9933905 ~ 9935771 (+) False G15714
TU21278 lncRNA upstream 4050 9933905 ~ 9935771 (+) False G15714
TU21282 lncRNA upstream 4050 9933905 ~ 9935771 (+) False G15714
TU21300 lncRNA downstream 11702 9965892 ~ 9966604 (+) True G15723
TU21301 lncRNA downstream 11702 9965892 ~ 9966604 (+) False G15723
TU21302 lncRNA downstream 11702 9965892 ~ 9966604 (+) False G15723
TU21303 lncRNA downstream 11702 9965892 ~ 9966604 (+) False G15723
TU21304 lncRNA downstream 11702 9965892 ~ 9966604 (+) False G15723
XM_039780891.1 mRNA upstream 142095 9750631 ~ 9797726 (+) True clip3
XM_039780892.1 mRNA upstream 142095 9750631 ~ 9797726 (+) False clip3
XM_039788367.1 mRNA upstream 286990 9634274 ~ 9652831 (+) True LOC120551159
XM_039783389.1 mRNA upstream 314040 9603260 ~ 9625781 (+) True LOC120547748
XM_039788344.1 mRNA upstream 385205 9544019 ~ 9554616 (+) True LOC120551143
XM_039779289.1 mRNA downstream 101804 10055994 ~ 10119839 (+) True si:ch211-137a8.4
XM_039779298.1 mRNA downstream 102679 10056869 ~ 10119839 (+) False si:ch211-137a8.4
XM_039787317.1 mRNA downstream 405199 10359389 ~ 10376811 (+) True LOC120550666
XM_039787324.1 mRNA downstream 405241 10359431 ~ 10376811 (+) False LOC120550666
XM_039784386.1 mRNA downstream 434042 10388232 ~ 10401550 (+) True zgc:101731
unassigned_transcript_87 other upstream 55217 9884513 ~ 9884604 (+) True trnar-ucu_11
unassigned_transcript_86 other upstream 69897 9869833 ~ 9869924 (+) True trnar-ucu_10
TU21180 other upstream 271342 9645137 ~ 9668479 (+) True G15642
TU21176 other upstream 303342 9634304 ~ 9636479 (+) False LOC120551159
TU21264 other downstream 5876 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other downstream 5876 9960066 ~ 9965774 (+) False LOC120551195
TU21270 other downstream 48060 10002250 ~ 10003595 (+) True G15712
XR_005638446.1 other downstream 1602117 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 1603262 11557452 ~ 11557600 (+) True LOC120554442

Expression Profile