RNA id: TU21304


Basic Information

Item Value
RNA id TU21304
length 498
lncRNA type intronic
GC content 0.44
exon number 2
gene id G15723
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9965892 ~ 9966604 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gacacacactgacacacacttacacacacacacacacacacacacacacacacacacacacacacacacacactgaccctgatggactgacacacacacacacacacacacactgacacacactgacacacacacacacacacacactctcacacatacacacacaaagactgacacacacagacacacacatacacacacacaccacacacacacacacacacacactctcacacatacacacacaaagacccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgacccctgattggttttaaatgtttaacttatTAATGTTACCAACCTGTTTCTGTGTTAATTTATAGTATGTATGAGAGTGTTCTGGATCCATGTTGATGCACTTTACTGATgttgggagttgtagttttttagCTCTATAAGTGGACTACATTTGAAAAGCTCCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21296 lncRNA upstream 357 9947772 ~ 9965535 (+) True G15720
TU21265 lncRNA upstream 10409 9953462 ~ 9955483 (+) False LOC120551195
TU21292 lncRNA upstream 11702 9939821 ~ 9954190 (+) True G15719
TU21293 lncRNA upstream 11702 9939821 ~ 9954190 (+) False G15719
TU21294 lncRNA upstream 11702 9939821 ~ 9954190 (+) False G15719
TU21314 lncRNA downstream 37907 10004511 ~ 10004729 (+) True G15727
TU21725 lncRNA downstream 168904 10135508 ~ 10135731 (+) True G16031
TU21727 lncRNA downstream 172399 10139003 ~ 10166469 (+) True G16033
TU21739 lncRNA downstream 217089 10183693 ~ 10185685 (+) True G16044
TU21744 lncRNA downstream 222359 10188963 ~ 10195210 (+) True G16048
XM_039780891.1 mRNA upstream 168166 9750631 ~ 9797726 (+) True clip3
XM_039780892.1 mRNA upstream 168166 9750631 ~ 9797726 (+) False clip3
XM_039788367.1 mRNA upstream 313061 9634274 ~ 9652831 (+) True LOC120551159
XM_039783389.1 mRNA upstream 340111 9603260 ~ 9625781 (+) True LOC120547748
XM_039788344.1 mRNA upstream 411276 9544019 ~ 9554616 (+) True LOC120551143
XM_039779289.1 mRNA downstream 89390 10055994 ~ 10119839 (+) True si:ch211-137a8.4
XM_039779298.1 mRNA downstream 90265 10056869 ~ 10119839 (+) False si:ch211-137a8.4
XM_039787317.1 mRNA downstream 392785 10359389 ~ 10376811 (+) True LOC120550666
XM_039787324.1 mRNA downstream 392827 10359431 ~ 10376811 (+) False LOC120550666
XM_039784386.1 mRNA downstream 421628 10388232 ~ 10401550 (+) True zgc:101731
TU21264 other upstream 118 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other upstream 118 9960066 ~ 9965774 (+) False LOC120551195
TU21262 other upstream 21447 9885613 ~ 9944445 (+) False LOC120551195
unassigned_transcript_87 other upstream 81288 9884513 ~ 9884604 (+) True trnar-ucu_11
unassigned_transcript_86 other upstream 95968 9869833 ~ 9869924 (+) True trnar-ucu_10
TU21270 other downstream 35646 10002250 ~ 10003595 (+) True G15712
XR_005638446.1 other downstream 1589703 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 1590848 11557452 ~ 11557600 (+) True LOC120554442
XR_005638440.1 other downstream 1593787 11560391 ~ 11560539 (+) True LOC120554427
XR_005638430.1 other downstream 1595652 11562256 ~ 11562404 (+) True LOC120554420

Expression Profile