RNA id: TU21314


Basic Information

Item Value
RNA id TU21314
length 219
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G15727
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 10004511 ~ 10004729 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgaatgaacacatatggaattatgtacttaacaaaaaagtgtgaaataactgaaaacatgtcttatattttagattcttcaaagtagccaccctttgcttttttttgataactctgcaaacccttggtgttctctcaatgagcttcatgaggtagtcacctgaaatggttttaccttcacaggtgtgctttgtcagggttaattagtggaattttttc

Function

GO: NA

KEGG:

id description
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21266 lncRNA upstream 1139 9866710 ~ 10003372 (+) False LOC120551195
TU21263 lncRNA upstream 35329 9953462 ~ 9969182 (+) False LOC120551195
TU21300 lncRNA upstream 37907 9965892 ~ 9966604 (+) True G15723
TU21301 lncRNA upstream 37907 9965892 ~ 9966604 (+) False G15723
TU21302 lncRNA upstream 37907 9965892 ~ 9966604 (+) False G15723
TU21725 lncRNA downstream 130779 10135508 ~ 10135731 (+) True G16031
TU21727 lncRNA downstream 134274 10139003 ~ 10166469 (+) True G16033
TU21739 lncRNA downstream 178964 10183693 ~ 10185685 (+) True G16044
TU21744 lncRNA downstream 184234 10188963 ~ 10195210 (+) True G16048
TU21806 lncRNA downstream 382943 10387672 ~ 10387988 (+) True G16101
XM_039788424.1 mRNA upstream 28009 9953552 ~ 9976502 (+) True LOC120551195
XM_039780891.1 mRNA upstream 206785 9750631 ~ 9797726 (+) True clip3
XM_039780892.1 mRNA upstream 206785 9750631 ~ 9797726 (+) False clip3
XM_039788367.1 mRNA upstream 351680 9634274 ~ 9652831 (+) True LOC120551159
XM_039783389.1 mRNA upstream 378730 9603260 ~ 9625781 (+) True LOC120547748
XM_039779289.1 mRNA downstream 51265 10055994 ~ 10119839 (+) True si:ch211-137a8.4
XM_039779298.1 mRNA downstream 52140 10056869 ~ 10119839 (+) False si:ch211-137a8.4
XM_039787317.1 mRNA downstream 354660 10359389 ~ 10376811 (+) True LOC120550666
XM_039787324.1 mRNA downstream 354702 10359431 ~ 10376811 (+) False LOC120550666
XM_039784386.1 mRNA downstream 383503 10388232 ~ 10401550 (+) True zgc:101731
TU21270 other upstream 916 10002250 ~ 10003595 (+) True G15712
TU21264 other upstream 38737 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other upstream 38737 9960066 ~ 9965774 (+) False LOC120551195
TU21262 other upstream 60066 9885613 ~ 9944445 (+) False LOC120551195
unassigned_transcript_87 other upstream 119907 9884513 ~ 9884604 (+) True trnar-ucu_11
XR_005638446.1 other downstream 1551578 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 1552723 11557452 ~ 11557600 (+) True LOC120554442
XR_005638440.1 other downstream 1555662 11560391 ~ 11560539 (+) True LOC120554427
XR_005638430.1 other downstream 1557527 11562256 ~ 11562404 (+) True LOC120554420
TU22150 other downstream 1889775 11894504 ~ 11900873 (+) True G16267

Expression Profile