RNA id: TU21360



Basic Information


Item Value
RNA id TU21360
length 223
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G15768
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8503932 ~ 8504154 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ACGCAGCTCATCCTGGTCCATCCACACAGTCGACGCGCCCATTGAGGGCGGACTCTCCCCCCTCGGACTCATCAACCTCCACGCTGGTCATCGGAAGCTCCATGGTAAGGGACCTCTATATTCCCCCTTCTCCTAGCGGTCCCTCCAAGGTCTACTGCTTCCCCGGTGCCAAGGTCCGtgacatccagcacaaactTCCCGGCATCCTCGCCCGCCACGCCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005636443.1 lncRNA downstream 19563 8483166 ~ 8484369 (-) True LOC120544083
TU20852 lncRNA downstream 164552 8339161 ~ 8339380 (-) True G15446
TU20845 lncRNA downstream 178149 8324821 ~ 8325783 (-) True G15439
TU20830 lncRNA downstream 243246 8260151 ~ 8260686 (-) True G15430
TU20828 lncRNA downstream 248348 8254873 ~ 8255584 (-) True G15428
TU21380 lncRNA upstream 47437 8551591 ~ 8600313 (-) True G15783
TU21381 lncRNA upstream 47437 8551591 ~ 8600313 (-) False G15783
TU21400 lncRNA upstream 76467 8580621 ~ 8582560 (-) True G15793
TU21368 lncRNA upstream 97763 8601917 ~ 8656963 (-) False G15771
XR_005636448.1 lncRNA upstream 167863 8672017 ~ 8672342 (-) True LOC120544089
XM_039777235.1 mRNA downstream 111655 8369769 ~ 8392277 (-) True LOC120543874
XM_039788227.1 mRNA downstream 348629 8138024 ~ 8155303 (-) False LOC120551075
XM_039777191.1 mRNA downstream 405468 8079224 ~ 8098464 (-) True LOC120543856
XM_039776786.1 mRNA downstream 440591 8022628 ~ 8063341 (-) False LOC120543635
XM_039776935.1 mRNA upstream 118328 8622482 ~ 8638087 (-) True LOC120543728
XM_039777372.1 mRNA upstream 178509 8682663 ~ 8684484 (-) True LOC120543940
XM_039778440.1 mRNA upstream 187920 8692074 ~ 8742043 (-) True LOC120544569
XM_039777139.1 mRNA upstream 324259 8828413 ~ 8841376 (-) True LOC120543840
XM_039776983.1 mRNA upstream 345336 8849490 ~ 8880046 (-) False atg16l1
TU21348 other downstream 34172 8468357 ~ 8469760 (-) True G15757
TU20786 other downstream 363157 8137301 ~ 8140775 (-) False LOC120551075
unassigned_transcript_85 other downstream 567605 7936256 ~ 7936327 (-) True trnaa-cgc
unassigned_transcript_84 other downstream 993861 7510000 ~ 7510071 (-) True trnag-ucc
TU20455 other downstream 1163324 7309914 ~ 7340608 (-) True lrch3
TU21363 other upstream 97918 8602072 ~ 8602890 (-) True G15771
XR_005638459.1 other upstream 350158 8854312 ~ 8854592 (-) True LOC120554466
XR_005638457.1 other upstream 356207 8860361 ~ 8860640 (-) True LOC120554461
XR_005638456.1 other upstream 370187 8874341 ~ 8874620 (-) True LOC120554459
TU21433 other upstream 467760 8971914 ~ 9046433 (-) True G15820

Expression Profile