RNA id: XM_039778440.1


Basic Information

Item Value
RNA id XM_039778440.1
length 3385
RNA type mRNA
GC content 0.56
exon number 26
gene id LOC120544569
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8692074 ~ 8742123 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCCCCTGCAGACGTCTCATTCTGTGTGCAGACAACAGGAAGGAGATGGAGGAGTGGATGGCCGCTCTACGCTGCATTCAGAACAGACACAACTAtgagTCCACCCAGTACAGCATGGACCACTTCAGCGGGACACACAACTGGTACGCGTGCTCTCACGCCAGACCGACCTACTGCAACGTGTGCAGAGAGGCGCTGTCGGGGGTCACGTCCCACGGCCTGTCCTGTGAAGGTGTCCATGCCCCACCAGTGGCTGGAGGGGAACCTGCCTGTCTCCGCTAAGTGTAACGTCTGTGATAAAACGTGTGGCAGCGTCCTCCGCCTGCAGGACTGGAGGTGTCTCTGGTGTAAAGCCATGGTGCACTCCGGCTGTAAGGAGCAGCTGTCCTCTAAATGTCCTCTGGGTCAGTGTAAGGTCTCAGTCATCCCTCCTACAGCTCTCAACAGCATCGACTCTGAtggtttcTGGAAGGCCTCCTGCCCCCCCTCATGTACCAGTCCTCTGCTGGTCTTCGTGAACTCTAAGAGCGGAGACAACCAGGGGGTCAAGTTCCTACGCCGGTTCAAACAGCTGCTGAACCCGGCTCAGGTGTTCGACCTGATGAATGGGGGGCCACACCTGGGGCTGCGGTTGTTCCAGAAGTTTGATACGTTCAGGATCCTGGTGTGTGGAGGAGACGGCAGCGTTGGCTGGGTTCTTTCTGACATAGACACTCTCACACTGCacaaacagtgcCAGCTGGGGGTTCTCCCTCTGGGGACGGGGAACGACCTGGCCCGGGTCCTGGGCTGGGGGGCCGCCTGCGACGACGACACACAGCTGCCCCAGATCCTGGAGAAACTGGAGAGGGCCAGCACCAAGATGTTAGACAGGTGGAGTATTATGGTCTATGAGACAAAATTTCCACGGCAACGTTCTGCATCCTCCGTCACCGAGGACTGCAGTGAGGACTCTGAGGTTCAGGAGATTCTGACCTATGAGGACTCGGTTGCTGCTCACCTGTCCAAGATCCTGACATCAGACCAGCACTCTGTCGTCATCTCCTCAGCCAAggtCCTGTGTGAGACGGTGAAGGACTTTGTTGCTCGGGTGGGTAAAGCGTACGAGAAGAACACAGAGAGTTCAGAGGAGTCCGAGAGCATGGCCAAGAAGTGCTGTGTGCTGAAGGAGAAGCTGGACTCTCTCCTCCAGACTCTGAACCAGGAGGCCCAGGCCTCCACGCTGCCggctcccccccccaccatcgccgaggagcaggaggaggccGAGGGGGTCGCCATGaaaacctcttcctcctcttcatcaccatcatcatcaccatcatcatcatcatcatcacacccCCCTCCACCAGCCGCCATCTTTAAACCCAGAGAGCAGCTGATGCTGAGAGCCAACAGTCTGAAGAAAGCCATCAGACAGATCATCGAACACACCGAGAGAgcggtAGATGAGCAGAATGCTCAGAcccagcagcatcagcagctGTTCTCTCCTCTCGGTGCTGAGGAAGACGAGGGTCtgccagaggaggaagaggaggaggacaaggTCTCTCTGCAGTCGTCCTACAGCACCAAGCAACGCAGCACACGCAGAGtcACTAAGACTCCGTGTGAGAGGCTGATCAGTAAAGGCGGCCTATCACTGGGCAGCTCTGCGTCACTTCCTCTCCAGACAGGAAGTAGGGAGAACATGCCCATGCTGAACACAAAGATCCTCTATCCAGctcTCAGAGGTTTCTCAGCTTCTCTCTCCAGCAGTTCTGTCATCAGTCGACTATTGGTCAATGCCGACCCGTTCAGCTGTGACCCCGACAACatgttacaGTGTGATGGGCGTCCGATCCCTCTCCCCAGTCTGCAAGGCATCGCTGTGTTGAACATCCCGAGCTACGCCGGAGGAACCAACTTCTGGGGAGGAACCAAAGAGGACGATacgTTCACAGCTCCGTCCTTCGATGATAAGATCCTGGAGGTGGTGGCCGTGTTCGGCAGCATGCAGATGGCTGTCTCCAGGGTGATCAACCTGCAACACCACCGCATTGCACAgtgcCGGATGGTGAAGATCACTATCCTGGGTGATGAAGGCGTCCCGGTGCAGGTAGACGGGGAGGCCTGGGTCCAGCCTCCAGGTTACATCAAGATCATCCACAAGAACCGGACCCAGACCCTGACCAGGGACAGGgcgTTCGAGAGCACCCTGAAGTCCTGGGAGGACAAACAGAAGTGTGAGTTTGTCCGGTCGCCCCCCCCTCCGCCGGCCGCGTCCTCACAGCCGGAGATCGTCTCCGAGGAAGAGACGGCGCTCGTCAGCGAGTTGGGACAGGCAGCTGGAGCTCTcatacacagTATCCGGGAGGTGGCCCAGTCTCATCACAGTCTGGAACAGGAACTGGCTCACGCTGTCAACGCCAGCTCCAAGGCCATGGACGTGGTCTACGCCAAGTCCAACACCTCCGGGgCCCTGAGCTGCAGTCTGGTCCTTCAGATGGTCAGCAACGTCAAAGCCTTACTCAGTGAGACTGAACTGCTGCTGGCTGGGAAGATGTCCATGcagctgGATCCTCCCCAGCAGGAACAGCTGACTGCAGCTCTGAGTTCGGTGTCTCAGCAGCTCCGACGACTCGCTGACGTTCCCTGGCTCAGTCCCGTCATCGACGAGgGTCCTCTGACAGATTTTTCCAAACGCAGTCGGAGCGCAAAGTTTCGTCTCGTCCCGAAGttcaaaaaagacaaaaacaacaaaaacaaagagacCTGCGCTACTCTGTCTCTGCCAGttcACCAGTGGGGGACAGAGGAGGTGGGGGCGTGGCTGGACTTCCTGTGTCTCTCTGAGTATAAAGACATCTTCATCGGACACGACGTCCGCGGAGCCGAACTCATCCACCTGGAGAGGAGGGACCTGAAGgatctGGGTGTAACTAAAGTAGGTCACATTAAGAGGATCCTTCAGGGAATCCGAGAGATCAACAGGAACAGCAGCGCCAGCGAGGCCTGAAGACGCCGTCAGATGCAGCGATGTGATAACGGACGTTTCCTCTGACCCTGAACACAGCCACATGCTGTGACATCACATCTGACGCTCGCTGTGATTGGACCAATACCAGGACCCGCTAGTGCCTTGTCATCTCACCCGGGAGGCGGAGAGGGCGGGGCCTAACATGGATCCACCGCCACCAGAGACTTTTAAACCTTTATTGACATTGTCTTACCTTCAGACCCAAACAGAACGTTTAGAACAAGTCTGCCGAGTCAGAGACTCTCTGTGTGGAGAGGACACGCGTTCACGTTCTCCCTTTGGTCTCATTTCTTTAGAATCTGCAGAATCTGTCTTcatgtctttctgtcttcatgtctttctgtctttctgtcttcatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636448.1 lncRNA downstream 19732 8672017 ~ 8672342 (-) True LOC120544089
TU21368 lncRNA downstream 35111 8601917 ~ 8656963 (-) False G15771
TU21380 lncRNA downstream 91761 8551591 ~ 8600313 (-) True G15783
TU21422 lncRNA upstream 8368 8750411 ~ 8750948 (-) True G15812
TU21432 lncRNA upstream 35987 8778030 ~ 8778542 (-) True G15819
TU21444 lncRNA upstream 59403 8801446 ~ 8801978 (-) True G15826
TU21428 lncRNA upstream 138395 8880438 ~ 8912301 (-) False spint2
TU21453 lncRNA upstream 142813 8884856 ~ 8885515 (-) True G15832
XM_039777372.1 mRNA downstream 7590 8682663 ~ 8684484 (-) True LOC120543940
XM_039776935.1 mRNA downstream 53987 8622482 ~ 8638087 (-) True LOC120543728
XM_039777235.1 mRNA downstream 299797 8369769 ~ 8392277 (-) True LOC120543874
XM_039788227.1 mRNA downstream 536771 8138024 ~ 8155303 (-) False LOC120551075
XM_039777191.1 mRNA downstream 593610 8079224 ~ 8098464 (-) True LOC120543856
XM_039777139.1 mRNA upstream 86370 8828413 ~ 8841376 (-) True LOC120543840
XM_039776983.1 mRNA upstream 107447 8849490 ~ 8880046 (-) False atg16l1
XM_039776975.1 mRNA upstream 107447 8849490 ~ 8880046 (-) True atg16l1
XM_039777012.1 mRNA upstream 138433 8880476 ~ 8914977 (-) True spint2
XM_039777467.1 mRNA upstream 179393 8921436 ~ 8923366 (-) True LOC120543996
TU21363 other downstream 89184 8602072 ~ 8602890 (-) True G15771
TU21348 other downstream 222314 8468357 ~ 8469760 (-) True G15757
TU20786 other downstream 551299 8137301 ~ 8140775 (-) False LOC120551075
unassigned_transcript_85 other downstream 755747 7936256 ~ 7936327 (-) True trnaa-cgc
unassigned_transcript_84 other downstream 1182003 7510000 ~ 7510071 (-) True trnag-ucc
XR_005638459.1 other upstream 112269 8854312 ~ 8854592 (-) True LOC120554466
XR_005638457.1 other upstream 118318 8860361 ~ 8860640 (-) True LOC120554461
XR_005638456.1 other upstream 132298 8874341 ~ 8874620 (-) True LOC120554459
TU21433 other upstream 229871 8971914 ~ 9046433 (-) True G15820
TU21489 other upstream 389496 9131539 ~ 9144120 (-) False LOC120543625

Expression Profile