RNA id: TU21444


Basic Information

Item Value
RNA id TU21444
length 461
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G15826
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 8801446 ~ 8801978 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cggtgctttaacactgagtattgattggtcagtaggcggtggtttaacactgagtattgattggtcagtaggcggtggtTTAACACTGAGTaatgattggtcagtaggcggtggtttaacactgagtattgattggtcagtaggtggtgctttaacactgagtattgattggtcagtaggcgatggtttaacactgagtattgattggtcagtaggtggtgctttaaaaccggttgatctctaatctccaacttaacctgctcccgaccaggttaggtgttcaccATGAGTTACtgcggcgattgaacccggtaacaactaatccaccaTCGTGGTACAGAAAACCCTGAACCTGAATTTACCTCGGTaatgccaaatcctgcttcgtagtacaggcctctggtgtaGACCTGGCTctgtcatgcacacacacacacacacacacactctcacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21432 lncRNA downstream 22904 8778030 ~ 8778542 (-) True G15819
TU21422 lncRNA downstream 50498 8750411 ~ 8750948 (-) True G15812
TU21419 lncRNA downstream 57100 8735489 ~ 8744346 (-) True G15809
TU21420 lncRNA downstream 59323 8739270 ~ 8742123 (-) False LOC120544569
TU21415 lncRNA downstream 104300 8696745 ~ 8697146 (-) True G15807
TU21428 lncRNA upstream 78460 8880438 ~ 8912301 (-) False spint2
TU21453 lncRNA upstream 82878 8884856 ~ 8885515 (-) True G15832
XR_005636446.1 lncRNA upstream 83948 8885926 ~ 8886911 (-) True LOC120544086
XR_005636433.1 lncRNA upstream 92806 8894784 ~ 8896382 (-) False LOC120544051
XR_005636432.1 lncRNA upstream 92806 8894784 ~ 8896380 (-) True LOC120544051
XM_039778440.1 mRNA downstream 59403 8692074 ~ 8742043 (-) True LOC120544569
XM_039777372.1 mRNA downstream 116962 8682663 ~ 8684484 (-) True LOC120543940
XM_039776935.1 mRNA downstream 163359 8622482 ~ 8638087 (-) True LOC120543728
XM_039777235.1 mRNA downstream 409169 8369769 ~ 8392277 (-) True LOC120543874
XM_039788227.1 mRNA downstream 646143 8138024 ~ 8155303 (-) False LOC120551075
XM_039777139.1 mRNA upstream 26435 8828413 ~ 8841376 (-) True LOC120543840
XM_039776983.1 mRNA upstream 47512 8849490 ~ 8880046 (-) False atg16l1
XM_039776975.1 mRNA upstream 47512 8849490 ~ 8880046 (-) True atg16l1
XM_039777012.1 mRNA upstream 78498 8880476 ~ 8914977 (-) True spint2
XM_039777467.1 mRNA upstream 119458 8921436 ~ 8923366 (-) True LOC120543996
TU21363 other downstream 198556 8602072 ~ 8602890 (-) True G15771
TU21348 other downstream 331686 8468357 ~ 8469760 (-) True G15757
TU20786 other downstream 660671 8137301 ~ 8140775 (-) False LOC120551075
unassigned_transcript_85 other downstream 865119 7936256 ~ 7936327 (-) True trnaa-cgc
unassigned_transcript_84 other downstream 1291375 7510000 ~ 7510071 (-) True trnag-ucc
XR_005638459.1 other upstream 52334 8854312 ~ 8854592 (-) True LOC120554466
XR_005638457.1 other upstream 58383 8860361 ~ 8860640 (-) True LOC120554461
XR_005638456.1 other upstream 72363 8874341 ~ 8874620 (-) True LOC120554459
TU21433 other upstream 169936 8971914 ~ 9046433 (-) True G15820
TU21489 other upstream 329561 9131539 ~ 9144120 (-) False LOC120543625

Expression Profile