RNA id: XM_039776768.1


Basic Information

Item Value
RNA id XM_039776768.1
length 3527
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC120543625
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9130984 ~ 9210517 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATCAGAGCAGTCCAGTACGTGGAGCTGTGACTCATCAGGAAACAACTCACCTGAGTTGTTCTACGTCGACATTTTGGACTGTTTGaagaaactACTGACTTCAGATCAGAAGATGAGTGgtttggaggaagaggaggatggagcAGAGTCTGTAGTATCTGGCTGTCTGTCTATGAAGAGTGACCGGTCCAATGATCATCCTCCAGACTTCAGTAATgaacctggaccctcagacacaaaAGTTCAGGacaacagacagagagcagagtctGTAGTATCTGGCTGTCTGTCTATGAAGAGTGACCGGTCCAAAGACCCTCCTCTGACCTTCAGTAATgaacctggaccctcagacacaaaagagaggaagaggagtgatGTTTCTGAGGAGGAGCAGCCgtccagaaccagaaccagagctGGACtccagacagccaatcagagcagctcTGAACAAATGAATGTTGGTCGTCAGAAACATAAGATCAGTCTGAAGGGGACATTTGAACGTGTGACTGAAGGAGCTGAAACAGGAAGTAGAACCCTCCTCAACAGGATCTACACTGTCCTCTACCTCATAGAGGGACAGAGTGAAGAGGTTAATACCCAACATGAGGTGAGGCAGCTCGAGTCAGCTTCCAAGAAGAAGATCCTCCATGACTCTCCAATCAAGTGCTGTGACATCTTTAAAGCCTCACCTGaccaacagaaacacatcagaGTGGTTCTGACGAGCGGCGTCGCTGGCGTTGGAAAAACCTTCTCAGTGCAGAAGTTCTGTCTGGACTGGGCCGAGGGTTTGGAGAACCAAGATATCAGTCTGGTGATTCCTCTTTCCTTCAGGGAGCTGAACTTGATCAAAGATGAGCAGTACAGTCTTCTGGAGCTGCTCCGTGTTTTCCATCCAACATTACAGGAGGTCCCAGCAGAGCAGCTCGCTGGCTCTAAACTTCTCTTCATCTTTGACGGCCTGGATGAAAGCAGACTTTACCTGGATTTCAACAACAATGAGGCTGTTTCTGATGTCACACAGAAGTCATCGGTTAACGTGCTGTTGACAAACCTCATCCAGGGGAAGCTGCTTCCCTCGGCTCTCATCTGGATAACTtcccgacctgcagcagccaatcagatccctcctgcgtGTGTTGACAGGGTAACAGAAGTACAAGGCTTCACTGATgcccagaaggaggagtacttcaggaagagagtcagtgatgaagagcagtccagcagaatcatctcccacatcaagacctccaggagcctccacatcatgtgtctgatcccagtcttctgctggatcactgctacagttctggaccaCATGTTGACTACAGACCagagaggagagctgcccaagaccctgactgacatgtactcacacttcctgctggttcagacaaagaggaagaagctCAAGTATGCTGAGGGACATGAGACGAGTCCACAGGAGCTGACGGAGGCTGACAGGGAAGTTCTTCTGAAGCTGGGGAGGCTGGCGTTTGAACAGCTGGAGAAAGGAAACATCATGTTCTACCAAGAAGACCTGGAGCGCTGTGGTCTGGATGTCACAGAGGCCTCGCTGTACTCAGGAGTTTGTTCAGAGATCTTCAAAAGAGAGAGTGTGATCTTCCAGAAAACAGTCTACTGCTTCGTTCATCTGagcgttcaggagtttctggctgcagtctacctgttccactgttaCACCAACAGGAACATAGACATACTGAAGGACTTCCTGAGGAAGAGAGCTATGGATTATGATGGTCATGGTGATTGGGACAATGATAATTACCCATCCCTGGATGTCTTTCTGAAGAGAGCTATGAAGAAATCCCTTGAAAGTGTAAATGGCCACCTGGACCTGTTTGTCCGCTTCCTTCATGGCCTCTCTCTGGAGTCCAACCAGAGACTCTTAGGAGGCctgctgggtcagacagacaacagtccAGAAATCATCCAGAGAGCCATCAACAACCTGAAGGAGATGAACAGTAATAAGATCTCTCCTGACAGAAGCATCAACCTCTTCCACTGTCTGACGGAGATGAACGACCACTCAGTCCATCAGGAGATCCAAGAGTTCCTGAAGTCAGAGAACAGATCAGAGAAGAGACTCTCTGTGTTCCACTGCTCAGCTCTGGCCTACATGCTGCAGATGTCAGAGGAGGTTCTGGATGAGTTGGACCTGGAGAAGTACAACACATCATGGGAGGGACGACagagactgattccagctgtgaGGAACTGCAGAAAGGCTCGactgagtggctgtaacatgtcagagagaagctgtgaagctctgtcctcagttctcagttcccagtcctctagtctgagagagctggacctgagtagcAACAACCTGCAagattcaggagggaagctgatatctgttggactgaagagtccacactgcagactggagactctcagactgagtgactgtaatctgtcagagaaaagctgtggagctctgtcctcagttctcagctcccagtcctctagtctgagagagctggacctgactaacaacaacctgcaggattcaggagggaagctgatctcTGTTGGACTTAAGAgttcacactgcacactggagactctcagtctgtcaggctgtctgatctcagaagaaggctgttcttctctggtctcagctctgagcgtcaacccctcccatctgagagagctggacctgagctacaatcatccaggagactcaggagtgaagTTACTGTCAGAGGGACTGAAAGATCctctctggagactggacactctcagggtggagcctgctggagtcagatggttgacaccaggtctgaggaagtattcctgtgaactcacactggacacaaacacagtggacagaaaactcaaactgtctgacaacaacaggaagatgacattagtggaggaggatcagccatatcctgatcatccagagaggtttgactcctggtatcagctgctgtgtagagatggtctaactggtcgctgttactgggaggttgagaggagaggagatgttttcatatcagtgagttacagaggaatcagcaggagaggagacggtgatgactgtgtgtttggatggaatgatcagtcctggagtctgaaGTGCTCTGATGTTAGTTACTCTGTCTGTCACAATAACAGAGTAAcacccatctcctcctcctctgtctctggtagagtagcagacatctcctcctcctctgtctctggtagagtagcagtgtatgtggactgtcctgccggctctctgtccttctacagagtctcctctgactcactgatccacctccacaccttcaacaccatattcactcagcctctctatcctgggttcaggttcagttctcgtggttcctcagtgtctctgtgtcctctgtaggacggagagtctcctcctgtttctcactgctgatcagttgagtctgtacaGGATCACACTAACAGACATATTTCGGCTTATTGTTATgaactaatgaatgaactttgtataaaataatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21510 lncRNA downstream 25383 9100931 ~ 9105601 (-) True G15874
TU21511 lncRNA downstream 25383 9101843 ~ 9105601 (-) False G15874
TU21501 lncRNA downstream 48430 9042283 ~ 9082554 (-) True G15867
TU21490 lncRNA downstream 52032 8996040 ~ 9078952 (-) True G15858
TU21481 lncRNA downstream 74005 8981188 ~ 9056979 (-) False G15853
TU21526 lncRNA upstream 15289 9174124 ~ 9175427 (-) True G15885
TU21560 lncRNA upstream 163924 9322759 ~ 9347087 (-) True G15916
TU21590 lncRNA upstream 203770 9362605 ~ 9363144 (-) True G15945
TU21592 lncRNA upstream 227840 9386675 ~ 9396837 (-) True LOC120544080
XR_005636441.1 lncRNA upstream 228256 9387091 ~ 9397215 (-) False LOC120544080
XM_039777467.1 mRNA downstream 207618 8921436 ~ 8923366 (-) True LOC120543996
XM_039777012.1 mRNA downstream 216007 8880476 ~ 8914977 (-) True spint2
XM_039776983.1 mRNA downstream 250938 8849490 ~ 8880046 (-) False atg16l1
XM_039776975.1 mRNA downstream 250938 8849490 ~ 8880046 (-) True atg16l1
XM_039777139.1 mRNA downstream 289608 8828413 ~ 8841376 (-) True LOC120543840
XM_039788278.1 mRNA upstream 37152 9195987 ~ 9201417 (-) True LOC120551100
XM_039777568.1 mRNA upstream 189374 9348209 ~ 9433655 (-) True eif2a
XM_039777530.1 mRNA upstream 329487 9488322 ~ 9502894 (-) True LOC120544027
XM_039788319.1 mRNA upstream 354641 9513476 ~ 9522231 (-) True LOC120551129
XM_039788333.1 mRNA upstream 365372 9524207 ~ 9531095 (-) True LOC120551135
TU21433 other downstream 84551 8971914 ~ 9046433 (-) True G15820
XR_005638456.1 other downstream 256364 8874341 ~ 8874620 (-) True LOC120554459
XR_005638457.1 other downstream 270344 8860361 ~ 8860640 (-) True LOC120554461
XR_005638459.1 other downstream 276392 8854312 ~ 8854592 (-) True LOC120554466
TU21363 other downstream 528094 8602072 ~ 8602890 (-) True G15771
TU21546 other upstream 79132 9237967 ~ 9238784 (-) True G15903
TU21567 other upstream 272026 9430861 ~ 9433602 (-) False eif2a
TU21571 other upstream 354669 9513504 ~ 9517970 (-) False LOC120551129
XR_005638376.1 other upstream 473088 9631923 ~ 9632028 (-) True LOC120554346
TU21765 other upstream 977853 10136688 ~ 10138347 (-) True G16066

Expression Profile