RNA id: TU21510


Basic Information

Item Value
RNA id TU21510
length 2088
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id G15874
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9100931 ~ 9105601 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atatctacctgtgcaggtgtgagcagctgtctggtgtgtgtatatatgtattaatatatataatatctaccTGTGCAGGTGTGAGCAGCTGtcggtgtgtgtatatatgtattaatatatataatatctacctgtgcaggtgtgagcagctgtctggtgtgtgtatatatgtattaatatatataatatctaccTGTGCAGGTGTGAGCAGCGCTGtctggtgtgtgtatatatgtattaatatatataatatctacctgtgcaggtgtgagcagctgtctggtgtgtgtatatatgtattaatatatataatatctacctgtgcaggtgtgagcagctgtctggtgtgtgtatatatgtattaatatatataatatctaccTGTACAGGTGTGAGCAGCTGtctggtgtgtgtatatatgtattaatatatataatatctacctgtgcaggtgtgagcagctgtctggtgtgtgtatatatgtattaatatatataatatctacctgtgcaggtgtgagcagctgtctggtgtgtgtatatatgtattaatatatataatatctaccTGTGCAGGTGTGAGCAGCTGTCTGGTGATGGTCCTGTTTGCCTCCGAAGTCAAACTTCACCATCTTTCTCGGCGGATCGCCAACTTCAACGAGGAGAACTTTGTTTTCCAGACGCACAGCGAACGCTACGGCCGCTGCTATTGGCTGTTCCTCCTCGTGGTCCTTCTGCACGCGCTCAACGTCCTGCTGATCCGATTGGCCGGGACGCACTTCCCCTTCCAGGGGGAGAAAGGGGCGGAGCCTAGTGGAGGAGCAGCTGACCTCATGTACTGATAAACACTGGGGGGCACACTTCCCCTCCCAGGGGGAGAAAGGGGCGGAGCCTAGTGGAGGAGCTGCTGACCTCATGTACTGAGACagactttttagacttttgtAGTAAAACTTTAAACTTTTTAGCCCTTTTCTCGAGGCTCTTTCCGAATGTTGTTTGTAGTAAAACTTCTTGTACCACAACTTACAACTTGACACTTGTGACTCTTTCAAAGCGTTTGTCGAAGTTGGATTTTTACACTTTTGAAGCATTTTAGTCATAGACTATAACTGTCtctatagatatagaacaatagactATAACTGTCtctatagatatagaacaatagactGTGACTGTCTCTACAGATATAGAACTATAGACTGTGACTGTCtctatagatatagaacaatagactGTGACTGTCTCTATAGATATAGAACTATAGACTATAACTGTCtctatagatatagaacaatagactGTGACTGTCTCTATAGATATAGAACTATAGACTGTGACTGTCtctatagatatagaacaatagactGTGACTGTCTCTATAGATATAGAACTATAGACTATAACTGTCtctatagatatagaacaatagactGTGACTGTCTCTATAGATATAGAACTATAGACTGTGACTGTCTCTATAGATATAGAACaatagactGTGACTGTCTCTATAGATATAGAACTATAGACTGTGACTGTCTCTATAGATATAGAACTATAGACTATAACTGTCtctatagatatagaacaatagactGTAACTGTCtctatagatatagaacaaaAGACTGTGACTGTGTCTATCGATATAGAACTATAGACTATAGTGCGACtgtgtcgcactgcttgctcttgagggaattactggaattgttggaattgttggggctttgtaaattatagagtgtggtctagacctactctatctgtaaagtgtctcgagataacttatgttatgatttgatactgtaaataaaattgaattgaaaattgaattgactgTCTCtaagatatagaacaatagactGTGACTGtctatagatatagaacaatagactGTGACTGTCtctatagatatagaacaatagactGTGACTGTCTCTATAGATATAGAACTATAGACTATGACTGTCtctatagatatagaacaatagactGTGACTGTCTATAGATATAGAACTATAGACTATGACTGTCtctatGATATAGAACTATAGACTATGAATGTCAATATAGATATAGA

Function

GO:

id name namespace
GO:0009069 serine family amino acid metabolic process biological_process
GO:0009070 serine family amino acid biosynthetic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0046394 carboxylic acid biosynthetic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process
GO:0006563 L-serine metabolic process biological_process
GO:0006564 L-serine biosynthetic process biological_process
GO:0016053 organic acid biosynthetic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21501 lncRNA downstream 18377 9042283 ~ 9082554 (-) True G15867
TU21490 lncRNA downstream 21979 8996040 ~ 9078952 (-) True G15858
TU21481 lncRNA downstream 43952 8981188 ~ 9056979 (-) False G15853
TU21482 lncRNA downstream 43952 8981188 ~ 9056979 (-) False G15853
TU21437 lncRNA downstream 54498 8973263 ~ 9046433 (-) False G15820
TU21491 lncRNA upstream 25405 9131006 ~ 9210517 (-) False LOC120543625
TU21526 lncRNA upstream 68523 9174124 ~ 9175427 (-) True G15885
TU21560 lncRNA upstream 217158 9322759 ~ 9347087 (-) True G15916
TU21590 lncRNA upstream 257004 9362605 ~ 9363144 (-) True G15945
TU21592 lncRNA upstream 281074 9386675 ~ 9396837 (-) True LOC120544080
XM_039777467.1 mRNA downstream 177565 8921436 ~ 8923366 (-) True LOC120543996
XM_039777012.1 mRNA downstream 185954 8880476 ~ 8914977 (-) True spint2
XM_039776983.1 mRNA downstream 220885 8849490 ~ 8880046 (-) False atg16l1
XM_039776975.1 mRNA downstream 220885 8849490 ~ 8880046 (-) True atg16l1
XM_039777139.1 mRNA downstream 259555 8828413 ~ 8841376 (-) True LOC120543840
XM_039776768.1 mRNA upstream 25383 9130984 ~ 9158835 (-) True LOC120543625
XM_039788278.1 mRNA upstream 90386 9195987 ~ 9201417 (-) True LOC120551100
XM_039777568.1 mRNA upstream 242608 9348209 ~ 9433655 (-) True eif2a
XM_039777530.1 mRNA upstream 382721 9488322 ~ 9502894 (-) True LOC120544027
XM_039788319.1 mRNA upstream 407875 9513476 ~ 9522231 (-) True LOC120551129
TU21433 other downstream 54498 8971914 ~ 9046433 (-) True G15820
XR_005638456.1 other downstream 226311 8874341 ~ 8874620 (-) True LOC120554459
XR_005638457.1 other downstream 240291 8860361 ~ 8860640 (-) True LOC120554461
XR_005638459.1 other downstream 246339 8854312 ~ 8854592 (-) True LOC120554466
TU21363 other downstream 498041 8602072 ~ 8602890 (-) True G15771
TU21489 other upstream 25938 9131539 ~ 9144120 (-) False LOC120543625
TU21546 other upstream 132366 9237967 ~ 9238784 (-) True G15903
TU21567 other upstream 325260 9430861 ~ 9433602 (-) False eif2a
TU21571 other upstream 407903 9513504 ~ 9517970 (-) False LOC120551129
XR_005638376.1 other upstream 526322 9631923 ~ 9632028 (-) True LOC120554346

Expression Profile