RNA id: TU21546



Basic Information


Item Value
RNA id TU21546
length 552
RNA type TUCP
GC content 0.34
exon number 2
gene id G15903
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9237967 ~ 9238784 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTTCAGCCAGAAGATAGTGGAACTTGAAGCCAGAATATCGACTCTCCACCAGATCAAGGCAAGTGAAGAGTTCCTCGACTCCATTATCATTGGAagttccccccacacacacactgacggatgttttgattccactgtgccctgcaatactctcaccccaccacgcactaatacaacctctgtccctgttgtctctcctcggCTTCTGCCGAGGACCCTGCCAGCTCTGCTGAccagctccactccacaccaACCTGAGCCATGGCGTGTAAGCAAGCACCAGAGCAGGCGGTCAGGACAACGCTCAGCCCCAGCCCAACCCCTACAACTAGAAAACCGCTACAGCATTCTGACGAACGACGAGGAGTTCCCTTCTCTGCCACGTCCCCACGCAGCTCATCCTGGTCCAGCGACACAATCGACGCGCCCACTGAGGGCGGACTCTCCCCCCTCGGACTCATCAACCTCCACGCTGATCATCGGAAGCTCCATGgaagggtgcggagagatggtccagactgttcgggctccacacctggctggaaccactct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21491 lncRNA downstream 27450 9131006 ~ 9210517 (-) False LOC120543625
TU21526 lncRNA downstream 62540 9174124 ~ 9175427 (-) True G15885
TU21510 lncRNA downstream 132366 9100931 ~ 9105601 (-) True G15874
TU21511 lncRNA downstream 132366 9101843 ~ 9105601 (-) False G15874
TU21501 lncRNA downstream 155413 9042283 ~ 9082554 (-) True G15867
TU21560 lncRNA upstream 83975 9322759 ~ 9347087 (-) True G15916
TU21590 lncRNA upstream 123821 9362605 ~ 9363144 (-) True G15945
TU21592 lncRNA upstream 147891 9386675 ~ 9396837 (-) True LOC120544080
XR_005636441.1 lncRNA upstream 148307 9387091 ~ 9397215 (-) False LOC120544080
TU21593 lncRNA upstream 163013 9401797 ~ 9402704 (-) True G15947
XM_039788278.1 mRNA downstream 36550 9195987 ~ 9201417 (-) True LOC120551100
XM_039776768.1 mRNA downstream 79132 9130984 ~ 9158835 (-) True LOC120543625
XM_039777467.1 mRNA downstream 314601 8921436 ~ 8923366 (-) True LOC120543996
XM_039777012.1 mRNA downstream 322990 8880476 ~ 8914977 (-) True spint2
XM_039776983.1 mRNA downstream 357921 8849490 ~ 8880046 (-) False atg16l1
XM_039777568.1 mRNA upstream 109425 9348209 ~ 9433655 (-) True eif2a
XM_039777530.1 mRNA upstream 249538 9488322 ~ 9502894 (-) True LOC120544027
XM_039788319.1 mRNA upstream 274692 9513476 ~ 9522231 (-) True LOC120551129
XM_039788333.1 mRNA upstream 285423 9524207 ~ 9531095 (-) True LOC120551135
XM_039777124.1 mRNA upstream 292237 9531021 ~ 9543141 (-) True LOC120543835
TU21489 other downstream 93847 9131539 ~ 9144120 (-) False LOC120543625
TU21433 other downstream 191534 8971914 ~ 9046433 (-) True G15820
XR_005638456.1 other downstream 363347 8874341 ~ 8874620 (-) True LOC120554459
XR_005638457.1 other downstream 377327 8860361 ~ 8860640 (-) True LOC120554461
XR_005638459.1 other downstream 383375 8854312 ~ 8854592 (-) True LOC120554466
TU21567 other upstream 192077 9430861 ~ 9433602 (-) False eif2a
TU21571 other upstream 274720 9513504 ~ 9517970 (-) False LOC120551129
XR_005638376.1 other upstream 393139 9631923 ~ 9632028 (-) True LOC120554346
TU21765 other upstream 897904 10136688 ~ 10138347 (-) True G16066
TU21762 other upstream 901392 10140176 ~ 10149571 (-) True G16064

Expression Profile