RNA id: TU21566



Basic Information


Item Value
RNA id TU21566
length 202
lncRNA type sense_over
GC content 0.43
exon number 2
gene id LOC120551163
representative False

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9676835 ~ 9710132 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ccacacattggacGAGCCTGCCTTTGTTCAAGTTCAATCAAACTAACGAGAAAGGGAGGAGTCGAACCAAAACACGGTTTCTTCAATTGGCTCTCTAATTTCCCTAGTTGCTGTTATCAtattcttatttattatttgagaAGCTTTCGCCGCCAAACGAGAAGTTCTGGCAGTAGAGCTGACTGCAACTAATGAAGAggac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21620 lncRNA downstream 10955 9555004 ~ 9669466 (-) True G15953
TU21578 lncRNA downstream 24761 9600552 ~ 9655660 (-) True G15933
TU21632 lncRNA downstream 36823 9643318 ~ 9643598 (-) True G15961
TU21589 lncRNA downstream 43400 9636730 ~ 9637021 (-) True G15944
TU21629 lncRNA downstream 50816 9625844 ~ 9629605 (-) True G15958
TU21652 lncRNA upstream 43021 9753153 ~ 9969138 (-) True G15977
TU21662 lncRNA upstream 58773 9768905 ~ 9775375 (-) True G15982
TU21664 lncRNA upstream 58887 9769019 ~ 9805899 (-) False G15983
TU21665 lncRNA upstream 58887 9769019 ~ 9805899 (-) False G15983
TU21666 lncRNA upstream 58887 9769019 ~ 9805899 (-) False G15983
XM_039777124.1 mRNA downstream 137280 9531021 ~ 9543141 (-) True LOC120543835
XM_039788333.1 mRNA downstream 149326 9524207 ~ 9531095 (-) True LOC120551135
XM_039788319.1 mRNA downstream 158190 9513476 ~ 9522231 (-) True LOC120551129
XM_039777530.1 mRNA downstream 177527 9488322 ~ 9502894 (-) True LOC120544027
XM_039777568.1 mRNA downstream 246766 9348209 ~ 9433655 (-) True eif2a
XM_039788414.1 mRNA upstream 137866 9847998 ~ 9851668 (-) True dharma
XM_039824593.1 mRNA upstream 443759 10153891 ~ 10178798 (-) False zgc:162698
XM_039824587.1 mRNA upstream 443759 10153891 ~ 10178795 (-) True zgc:162698
XM_039824601.1 mRNA upstream 474401 10184533 ~ 10201584 (-) False LOC120574297
XM_039824600.1 mRNA upstream 474401 10184533 ~ 10201584 (-) True LOC120574297
XR_005638376.1 other downstream 48393 9631923 ~ 9632028 (-) True LOC120554346
TU21571 other downstream 162451 9513504 ~ 9517970 (-) False LOC120551129
TU21567 other downstream 246819 9430861 ~ 9433602 (-) False eif2a
TU21546 other downstream 441637 9237967 ~ 9238784 (-) True G15903
TU21489 other downstream 536301 9131539 ~ 9144120 (-) False LOC120543625
TU21765 other upstream 426556 10136688 ~ 10138347 (-) True G16066
TU21762 other upstream 430044 10140176 ~ 10149571 (-) True G16064
TU21797 other upstream 616121 10326253 ~ 10330847 (-) False LOC120574316
TU21879 other upstream 711930 10422062 ~ 10424770 (-) True G16143
TU22339 other upstream 2239205 11949337 ~ 11955578 (-) True G16407

Expression Profile