RNA id: XM_039777568.1


Basic Information

Item Value
RNA id XM_039777568.1
length 1983
RNA type mRNA
GC content 0.57
exon number 14
gene id eif2a
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9348209 ~ 9433655 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTATGCTGATGTGGCACTGAAAGACCCGCCTTCTTCTGCCGTTACGTGTTTCCGGGAGACGGCCTTCCTTCTTCCCGGCACACGTAAACATGGCGCCCCCCATCCCTCTGCTAGCAGtgcGTGGATCAGATGGTACGGCTCTGCTCTCTGGTCCTCCCACATGTGAGGAACACTCATCCTTCcagagggACTCCAGGAGCAGCAGGTGTGTGACCTTCAGCAGAGATGGGACTCTGTTCGGCTGGTGCAACGGACAAAAtgtcTCCGTGGTGAAGTCTTCAGACGTCTCCGTGGTAACCTCCCTAAATCTCCCGAAGACGTCTCTGTTGGACATCTCTCCTCTCAACACCATCCTGGTCACCTGGCAACCGTACAGCAaaACCATCGCCAACAAGCTCCACATGCAGAAGGTGTCTGACTTCGTGTTGTCTCCTGGAGGACAGCCCAGCaagGTGTGCGTCTACGTCCCCGGCAGTAAAGGAGCTCCATCGTTTGTGCGTCTGTACCAGTACCCGGTGCTGGGGGGCCCCACCGCGGCAAGAGCCAACAAGAGCTTCTTCAAGGCCGACAGAGTCAGCATGGTCTGGAACAGGAAGGCGTCTGCTGTTCTGGTGACGGCGAGCACGGAGGTGGATAAAACCGGCGCTTCTTATTACGGCGAGCAGACGCTTCATTACCTCGCCGTCAACGGAGAGACCGCGCTGGTCCAGCTACAGAAGAAGGGTCCGATCTACGACGTGGTCTGGAGTCCCGGCTCGGCTGAGTTCTGCGTGGTCTACGGCTTCATGCCGGCTAAAGTCACCGTCTACAACCTTAAGTGTGATCCGGTGTTTGACTTCGGGACCGGACCCAGAAACGCTGCTTACtacagTCCTCAGGGTAACATCCTGGTCCTGGCTGGTTTCGGGAACCTGCGCGGACAGATGGAGGTCTGGGACGTCAAGAAGTACAAACAGGTGTCCAAACCCCAGGCGCCGGATGCCACGCATTTCTCCTGGTGTCCGGATGGCGAGCACGTTGTCACGGCGACGTGTGCCCCGCGGCTGCGCGTCAGTAACGGCTATAAGATCTGGCACTACACCGGCTCGGTGCTGCACCGCGAGGAGACGCCCGCCGGCAGCGAGCTGTGGGAGGTCCGCTGGCAGCCCTTCCCCGAGGGGAGCTTCCCCGAGAGGCCCGTCAAGTACCAGGCGGCGCCCAGCGAGCTCGGCACCACACAGGCCCCGCCCACTCAGGCCTACCGCCCCCCCGCACTCAGACACCTGCCGGCCACGCCCAGCAGCAAACTGcatgaGGAGGAGCTCCCCCAGAACCAGCGTCCGGTGGCCCCCGGAGATAAAGGTCTCTCTAAGTCCGCTCTGAAGAACCAGAAGAAACGAGAAGCCAAGAAAGCTGCGAAACAGGAGGCGAAGCCTGAACCTGAAGCTCCGTCTGATCCCGCCCCCGTCagcaacagccaatcagagccgagCAGCGGTGACCCCGAGACTGACAAGAAGATCAAGAACCTAAAGAAGAAACTGAAAGCCATCGAGGAGCTCAAGGATCAGCAGGCTTCTGGAAAAGTCCTGCAGAAGAACCAGCTGGAGAAGCTCCAGAAGGAGGATCAGCTGCTGAAGGAGCTGGAGGATCTACAGATCGGACAGTAGGGGGGGCTACAGGCCACGCCCCCCTCCctgtacacacatatacacacacagagacacacacacacacacacacacacacacacacacacacacacacacacagacacacacatttgattggatggatggatggatatgaGTTTTCTTTCGTCCCAAGGAATCCTGGgaaatgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggcccTGTTGCTATGCAACATCTGTACAGATGCTGAAGCCTTCAACAGTGtacctttcagaataaaagtagCTCATTAAAATGAAACTAATAAAGTTTGTTATTCAGTCA

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K15026 EIF2A; translation initiation factor 2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21560 lncRNA downstream 1122 9322759 ~ 9347087 (-) True G15916
TU21491 lncRNA downstream 137692 9131006 ~ 9210517 (-) False LOC120543625
TU21526 lncRNA downstream 172782 9174124 ~ 9175427 (-) True G15885
TU21510 lncRNA downstream 242608 9100931 ~ 9105601 (-) True G15874
TU21511 lncRNA downstream 242608 9101843 ~ 9105601 (-) False G15874
TU21575 lncRNA upstream 4107 9437762 ~ 9445079 (-) True G15930
TU21584 lncRNA upstream 73397 9507052 ~ 9514168 (-) True G15939
TU21587 lncRNA upstream 80686 9514341 ~ 9514991 (-) True G15942
TU21606 lncRNA upstream 111924 9545579 ~ 9546034 (-) False G15952
TU21607 lncRNA upstream 111924 9545579 ~ 9585942 (-) False G15952
XM_039788278.1 mRNA downstream 146792 9195987 ~ 9201417 (-) True LOC120551100
XM_039776768.1 mRNA downstream 189374 9130984 ~ 9158835 (-) True LOC120543625
XM_039777467.1 mRNA downstream 424843 8921436 ~ 8923366 (-) True LOC120543996
XM_039777012.1 mRNA downstream 433232 8880476 ~ 8914977 (-) True spint2
XM_039776983.1 mRNA downstream 468163 8849490 ~ 8880046 (-) False atg16l1
XM_039777530.1 mRNA upstream 54667 9488322 ~ 9502894 (-) True LOC120544027
XM_039788319.1 mRNA upstream 79821 9513476 ~ 9522231 (-) True LOC120551129
XM_039788333.1 mRNA upstream 90552 9524207 ~ 9531095 (-) True LOC120551135
XM_039777124.1 mRNA upstream 97366 9531021 ~ 9543141 (-) True LOC120543835
XM_039788379.1 mRNA upstream 243180 9676835 ~ 9680842 (-) True LOC120551163
TU21546 other downstream 109425 9237967 ~ 9238784 (-) True G15903
TU21489 other downstream 204089 9131539 ~ 9144120 (-) False LOC120543625
TU21433 other downstream 301776 8971914 ~ 9046433 (-) True G15820
XR_005638456.1 other downstream 473589 8874341 ~ 8874620 (-) True LOC120554459
XR_005638457.1 other downstream 487569 8860361 ~ 8860640 (-) True LOC120554461
TU21571 other upstream 79849 9513504 ~ 9517970 (-) False LOC120551129
XR_005638376.1 other upstream 198268 9631923 ~ 9632028 (-) True LOC120554346
TU21765 other upstream 703033 10136688 ~ 10138347 (-) True G16066
TU21762 other upstream 706521 10140176 ~ 10149571 (-) True G16064
TU21797 other upstream 892598 10326253 ~ 10330847 (-) False LOC120574316

Expression Profile