RNA id: XM_039788319.1


Basic Information

Item Value
RNA id XM_039788319.1
length 1918
RNA type mRNA
GC content 0.68
exon number 5
gene id LOC120551129
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9513476 ~ 9522231 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCGACGCGGAACTGTCCCTGTGTCCCTCCGCGGGCCCTGGATGTATCCCTCCGCGGGCCCTGGATGTGTCCCTCCGCGGGCCCCGGATGTGTCCGCTGCGGCCTCTCCGGCTCTCTTTGTCCGCAGAAAAAAAGCACCGAGATGCGCGCGTGTGTGCACCTGCTGCGGGTGACGGTCCACGAGCGGATCCTCGCGGCCGCCGAAGACTTTCTGCTGCGGCTGGAgaaaggagcagcagcagcagcagaagaagaagaagcgtCAGACAGGCCGCGGCTGAGAGCGCTGCTCACCGAGCGGCTCTCGGCGGCCGCGGAGGAGATCATCGCCCTGCTGGAGGAGACCGTGGCGGGGTACGAAGACAGAGCTGAGCGCTCCGAGCAGGAGATCTCCCGCCAGAGGAGGCTGCTCGAGGCCGTGCTGGAGCCGGAGGTCCGGCTGCACAGAGCGGAGTTTCTGCAGAAGAAGAGAGGACCCCCAGAGTCTCTGCAGAAGAAGAGAGGACCCCCAGAGTCTCGTGTCAGCGCTGAAGAAAACGCGTCTGAAGCCCAACGTGTCGACAACGAAGCCTCCTGCCCGGCAAcgcctgcctcctcctccccccaccccccccccgctGACTCTCCCCCCGCCTCCCCGAGCAGCGACAGTGACCACGACGACGATGActggaccaatcagagccgGGCTGCCACGCCTCataagaggaggaagagaggacgCCCGCCGCTCGCCGTCACACGGGACAAACAGTTTCTGCAGAAGAAGAGAGGACGCCCGCCGCTCGCCGTCACACGGGACCATCTGAACAAGCGTAGACGACCGGCATCGCCGCCGCAGAGCTTCAGCTGCCACGTGTGTCAGCGCTCGCTGCCGGGGAAAGGCTTCCTGCTGCGACACGTCCTGCAGGCCTGCGCCGGGGACGCGGCCGGCGCCCGCTGCGGCTTCTGCGGCGAGCTTCTGAGCTCGCCGACCGAACTGCCGGCTCACCTGCAGACGCACCGCGACGGCTGCCGAACCTGCCCGTTCTGCGGCAAGCGCTTCGGCTCCATCCTGGCGCGGGAGCTCCACGAGCGCCGGCACACGGGAGAGAAACCCTACAGCTGCGACGTCTGCGGGAGGACTTTCAGCCAGAAGGGAAACCTGGCGTCGCACGCCCGCGTGCACGCCGCCGAGAAGCCGTTCACGTGCACGGAGTGCGGCCGCGGCTTCTGCCACCGCACGTCGCTGGAGCGCCACGCGGAAGCACGCGGCGGCGGCGTTGCCCACTCGCGGCGTGGGGAGGTTCGGTCAACGCGCCCGCGGCGGAGACAACGCGGTACGCATCAGCAGGAGGGCGCCGGCACGACCACGGGCGCCACCGCCGCCGCGCCGCAGAGACTCCGGCGCTGCAGAGTCTGCGGCGACGCCTACAGGACGAGGAGCGCCCTGCTGAAACACGCCGAGACACACCTACAGGACGCCGAGGCCGGTCTCCTCTGCGGTCTCTGTGGTCATCAGTACGACTCGGCCGCGGCCCTCTCCTCCCACCTCCTGTCCCACCACAGCGAGCTCGCCAACACGTGTCACGTGTGCGGTAAGAGCTTCCCGGCGGCCGCGGCGCTGCTGATGCACCTGCGCGTCCACAGCGGCGAGAAGCCGTTCGGCTGCGGCGTCTGCGGCAAACGCTTCAACCAGAGCGGGAACCTGAAGACGCACGCCAAGATCCACAGCGGCGAGAAGCCGTTCAGCTGCGGCGTCTGCGGGAAACGCTTCACGCAGAAACAGACGCTGCGCACGCACGAACGCTTCCACAACAAAGAGCGCCGCTTCCTGTGTCAGGTGTGCGGGAAGGGCTTCATGCAGGAAGTGGACCTGAAGAGACACATCCTGATCCACACCGCGAGAAGTCATGCCGCTCGCCGGCGGCAACGCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21575 lncRNA downstream 68397 9437762 ~ 9445079 (-) True G15930
TU21573 lncRNA downstream 74634 9411493 ~ 9438842 (-) True G15928
TU21593 lncRNA downstream 110772 9401797 ~ 9402704 (-) True G15947
XR_005636441.1 lncRNA downstream 116261 9387091 ~ 9397215 (-) False LOC120544080
TU21592 lncRNA downstream 116639 9386675 ~ 9396837 (-) True LOC120544080
TU21606 lncRNA upstream 23348 9545579 ~ 9546034 (-) False G15952
TU21607 lncRNA upstream 23348 9545579 ~ 9585942 (-) False G15952
TU21616 lncRNA upstream 23348 9545579 ~ 9546034 (-) True G15952
TU21617 lncRNA upstream 23348 9545579 ~ 9546034 (-) False G15952
TU21620 lncRNA upstream 32773 9555004 ~ 9669466 (-) True G15953
XM_039777530.1 mRNA downstream 10582 9488322 ~ 9502894 (-) True LOC120544027
XM_039777568.1 mRNA downstream 79821 9348209 ~ 9433655 (-) True eif2a
XM_039788278.1 mRNA downstream 312059 9195987 ~ 9201417 (-) True LOC120551100
XM_039776768.1 mRNA downstream 354641 9130984 ~ 9158835 (-) True LOC120543625
XM_039777467.1 mRNA downstream 590110 8921436 ~ 8923366 (-) True LOC120543996
XM_039788333.1 mRNA upstream 1976 9524207 ~ 9531095 (-) True LOC120551135
XM_039777124.1 mRNA upstream 8790 9531021 ~ 9543141 (-) True LOC120543835
XM_039788379.1 mRNA upstream 154604 9676835 ~ 9680842 (-) True LOC120551163
XM_039788414.1 mRNA upstream 325767 9847998 ~ 9851668 (-) True dharma
XM_039824593.1 mRNA upstream 631660 10153891 ~ 10178798 (-) False zgc:162698
TU21567 other downstream 79874 9430861 ~ 9433602 (-) False eif2a
TU21546 other downstream 274692 9237967 ~ 9238784 (-) True G15903
TU21489 other downstream 369356 9131539 ~ 9144120 (-) False LOC120543625
TU21433 other downstream 467043 8971914 ~ 9046433 (-) True G15820
XR_005638456.1 other downstream 638856 8874341 ~ 8874620 (-) True LOC120554459
XR_005638376.1 other upstream 109692 9631923 ~ 9632028 (-) True LOC120554346
TU21765 other upstream 614457 10136688 ~ 10138347 (-) True G16066
TU21762 other upstream 617945 10140176 ~ 10149571 (-) True G16064
TU21797 other upstream 804022 10326253 ~ 10330847 (-) False LOC120574316
TU21879 other upstream 899831 10422062 ~ 10424770 (-) True G16143

Expression Profile