RNA id: TU21587


Basic Information

Item Value
RNA id TU21587
length 528
lncRNA type intronic
GC content 0.58
exon number 2
gene id G15942
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9514341 ~ 9514991 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCATTTCTGATGTCCCTTATGGGATTGAGGTCTGGGGACTGGGCTGGCTACTCCATAACATCAATCTGGTTCATCTGGAACCAAGACTTTGCTCCCTTACTGCtgtgttttgggtcattgtcttgttgaaagACTCATTTCAAAGGCATTTCCTCTTCAGCATGAGGCAACATGACCTCTTCAAGTACTTTGATGTATTGAAACTGATCCATGATCCCTTACTGTCTTCacagtgtaagtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtctctgtttgtctgtgtgtgtgtgtgtgtgtgtctctgtttgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtctgtctgtctgtctgtctgtctgtgtgtgtgtgtgtctctgtttgtctgtgtgtgtgtgtatgtatatgtgtatctgtgtgtgtgtgtctctgtgtgggtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21584 lncRNA downstream 173 9507052 ~ 9514168 (-) True G15939
TU21575 lncRNA downstream 69262 9437762 ~ 9445079 (-) True G15930
TU21573 lncRNA downstream 75499 9411493 ~ 9438842 (-) True G15928
TU21593 lncRNA downstream 111637 9401797 ~ 9402704 (-) True G15947
XR_005636441.1 lncRNA downstream 117126 9387091 ~ 9397215 (-) False LOC120544080
TU21606 lncRNA upstream 30588 9545579 ~ 9546034 (-) False G15952
TU21607 lncRNA upstream 30588 9545579 ~ 9585942 (-) False G15952
TU21616 lncRNA upstream 30588 9545579 ~ 9546034 (-) True G15952
TU21617 lncRNA upstream 30588 9545579 ~ 9546034 (-) False G15952
TU21620 lncRNA upstream 40013 9555004 ~ 9669466 (-) True G15953
XM_039777530.1 mRNA downstream 11447 9488322 ~ 9502894 (-) True LOC120544027
XM_039777568.1 mRNA downstream 80686 9348209 ~ 9433655 (-) True eif2a
XM_039788278.1 mRNA downstream 312924 9195987 ~ 9201417 (-) True LOC120551100
XM_039776768.1 mRNA downstream 355506 9130984 ~ 9158835 (-) True LOC120543625
XM_039777467.1 mRNA downstream 590975 8921436 ~ 8923366 (-) True LOC120543996
XM_039788333.1 mRNA upstream 9216 9524207 ~ 9531095 (-) True LOC120551135
XM_039777124.1 mRNA upstream 16030 9531021 ~ 9543141 (-) True LOC120543835
XM_039788379.1 mRNA upstream 161844 9676835 ~ 9680842 (-) True LOC120551163
XM_039788414.1 mRNA upstream 333007 9847998 ~ 9851668 (-) True dharma
XM_039824593.1 mRNA upstream 638900 10153891 ~ 10178798 (-) False zgc:162698
TU21567 other downstream 80739 9430861 ~ 9433602 (-) False eif2a
TU21546 other downstream 275557 9237967 ~ 9238784 (-) True G15903
TU21489 other downstream 370221 9131539 ~ 9144120 (-) False LOC120543625
TU21433 other downstream 467908 8971914 ~ 9046433 (-) True G15820
XR_005638456.1 other downstream 639721 8874341 ~ 8874620 (-) True LOC120554459
XR_005638376.1 other upstream 116932 9631923 ~ 9632028 (-) True LOC120554346
TU21765 other upstream 621697 10136688 ~ 10138347 (-) True G16066
TU21762 other upstream 625185 10140176 ~ 10149571 (-) True G16064
TU21797 other upstream 811262 10326253 ~ 10330847 (-) False LOC120574316
TU21879 other upstream 907071 10422062 ~ 10424770 (-) True G16143

Expression Profile