RNA id: TU21590



Basic Information


Item Value
RNA id TU21590
length 222
lncRNA type intronic
GC content 0.38
exon number 2
gene id G15945
representative True

Chromosome Information


Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9362605 ~ 9363144 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ctgtagggcagctaacgttaccttTAGCTATCtacatgaagctcccagctacgctaacgttactgtacctctgacagctgtagggcagctaacgttatctttagctgtctccatggaGCTCCCAGCTACGCTAACGTTACtgtaactctgacagctgtagggcagctaacgttacctttagctgtctccatgggTGGTAGGGGaggactcatgaatatgcct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21560 lncRNA downstream 15518 9322759 ~ 9347087 (-) True G15916
TU21491 lncRNA downstream 152088 9131006 ~ 9210517 (-) False LOC120543625
TU21526 lncRNA downstream 187178 9174124 ~ 9175427 (-) True G15885
TU21510 lncRNA downstream 257004 9100931 ~ 9105601 (-) True G15874
TU21511 lncRNA downstream 257004 9101843 ~ 9105601 (-) False G15874
TU21592 lncRNA upstream 23531 9386675 ~ 9396837 (-) True LOC120544080
XR_005636441.1 lncRNA upstream 23947 9387091 ~ 9397215 (-) False LOC120544080
TU21593 lncRNA upstream 38653 9401797 ~ 9402704 (-) True G15947
TU21573 lncRNA upstream 48349 9411493 ~ 9438842 (-) True G15928
TU21575 lncRNA upstream 74618 9437762 ~ 9445079 (-) True G15930
XM_039788278.1 mRNA downstream 161188 9195987 ~ 9201417 (-) True LOC120551100
XM_039776768.1 mRNA downstream 203770 9130984 ~ 9158835 (-) True LOC120543625
XM_039777467.1 mRNA downstream 439239 8921436 ~ 8923366 (-) True LOC120543996
XM_039777012.1 mRNA downstream 447628 8880476 ~ 8914977 (-) True spint2
XM_039776975.1 mRNA downstream 482559 8849490 ~ 8880046 (-) True atg16l1
XM_039777530.1 mRNA upstream 125178 9488322 ~ 9502894 (-) True LOC120544027
XM_039788319.1 mRNA upstream 150332 9513476 ~ 9522231 (-) True LOC120551129
XM_039788333.1 mRNA upstream 161063 9524207 ~ 9531095 (-) True LOC120551135
XM_039777124.1 mRNA upstream 167877 9531021 ~ 9543141 (-) True LOC120543835
XM_039788379.1 mRNA upstream 313691 9676835 ~ 9680842 (-) True LOC120551163
TU21546 other downstream 123821 9237967 ~ 9238784 (-) True G15903
TU21489 other downstream 218485 9131539 ~ 9144120 (-) False LOC120543625
TU21433 other downstream 316172 8971914 ~ 9046433 (-) True G15820
XR_005638456.1 other downstream 487985 8874341 ~ 8874620 (-) True LOC120554459
XR_005638457.1 other downstream 501965 8860361 ~ 8860640 (-) True LOC120554461
TU21567 other upstream 67717 9430861 ~ 9433602 (-) False eif2a
TU21571 other upstream 150360 9513504 ~ 9517970 (-) False LOC120551129
XR_005638376.1 other upstream 268779 9631923 ~ 9632028 (-) True LOC120554346
TU21765 other upstream 773544 10136688 ~ 10138347 (-) True G16066
TU21762 other upstream 777032 10140176 ~ 10149571 (-) True G16064

Expression Profile