RNA id: TU21592


Basic Information

Item Value
RNA id TU21592
length 517
lncRNA type intronic
GC content 0.38
exon number 3
gene id LOC120544080
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9386675 ~ 9397215 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagtctgtcaggctgtctgataTCAACGGAAGGCTGTtcttctctggtctcagctctgagctccaacccctcccatctgagagagctggacctgagctacaatcatgcaggagactcaggagtgaagctactGTCAGAGGGACTGGAGGATCctctctggagactggacactctcagggtggagcctgctggagtcagatggttgacaccaggtctgaggaagtattcctgtgaactcacattcgacacaaacacagtgaacagaaaactcaaactgtctgacaacaggaaggtgacattagtggaggaggatcagccatatcctgatcatccagagaggtttgactgcTGGTgtcctcagctgctgtgtagagatggtctgactggtcgctgttactgggaggttgagCTGAGAGGAGATGCtaatatatcagtgagttacagaggaatcagcaggAGAGGTGACTGTTGGTTTGGACGTAacgatcagtcctggagtctgagcTGCTCTGTTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21590 lncRNA downstream 23531 9362605 ~ 9363144 (-) True G15945
TU21560 lncRNA downstream 39588 9322759 ~ 9347087 (-) True G15916
TU21491 lncRNA downstream 176158 9131006 ~ 9210517 (-) False LOC120543625
TU21526 lncRNA downstream 211248 9174124 ~ 9175427 (-) True G15885
TU21510 lncRNA downstream 281074 9100931 ~ 9105601 (-) True G15874
TU21593 lncRNA upstream 4960 9401797 ~ 9402704 (-) True G15947
TU21573 lncRNA upstream 14656 9411493 ~ 9438842 (-) True G15928
TU21575 lncRNA upstream 40925 9437762 ~ 9445079 (-) True G15930
TU21584 lncRNA upstream 110215 9507052 ~ 9514168 (-) True G15939
TU21587 lncRNA upstream 117504 9514341 ~ 9514991 (-) True G15942
XM_039788278.1 mRNA downstream 185258 9195987 ~ 9201417 (-) True LOC120551100
XM_039776768.1 mRNA downstream 227840 9130984 ~ 9158835 (-) True LOC120543625
XM_039777467.1 mRNA downstream 463309 8921436 ~ 8923366 (-) True LOC120543996
XM_039777012.1 mRNA downstream 471698 8880476 ~ 8914977 (-) True spint2
XM_039776975.1 mRNA downstream 506629 8849490 ~ 8880046 (-) True atg16l1
XM_039777530.1 mRNA upstream 91485 9488322 ~ 9502894 (-) True LOC120544027
XM_039788319.1 mRNA upstream 116639 9513476 ~ 9522231 (-) True LOC120551129
XM_039788333.1 mRNA upstream 127370 9524207 ~ 9531095 (-) True LOC120551135
XM_039777124.1 mRNA upstream 134184 9531021 ~ 9543141 (-) True LOC120543835
XM_039788379.1 mRNA upstream 279998 9676835 ~ 9680842 (-) True LOC120551163
TU21546 other downstream 147891 9237967 ~ 9238784 (-) True G15903
TU21489 other downstream 242555 9131539 ~ 9144120 (-) False LOC120543625
TU21433 other downstream 340242 8971914 ~ 9046433 (-) True G15820
XR_005638456.1 other downstream 512055 8874341 ~ 8874620 (-) True LOC120554459
XR_005638457.1 other downstream 526035 8860361 ~ 8860640 (-) True LOC120554461
TU21567 other upstream 34024 9430861 ~ 9433602 (-) False eif2a
TU21571 other upstream 116667 9513504 ~ 9517970 (-) False LOC120551129
XR_005638376.1 other upstream 235086 9631923 ~ 9632028 (-) True LOC120554346
TU21765 other upstream 739851 10136688 ~ 10138347 (-) True G16066
TU21762 other upstream 743339 10140176 ~ 10149571 (-) True G16064

Expression Profile