RNA id: TCONS_00008400


Basic Information

Item Value
RNA id TCONS_00008400
length 879
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_003443
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24176418 ~ 24177651 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGCATAGAGACACTGCTCTTCTTTGTTGAAAGGTTGAGGTGTTTTGGGCATCTAAGATGCCTCCTGTTCATTGTCCAGTGAAGGTGCCTCCAACAGGGAGGAAAACCTATGGCAGACCCAGGCCAGCCTGGAGGGATTATATCTTTTGGCTGGCCCTGGAAAGCCTTGGGACAAGTCCTGGATAAGCAGAGGAAAAGGCTTCATACAGTAGTCTTGCTTGCCTGCCCCCAGTCACCCCTAGAGAGTCATTCAGACCTTTAGTTTCCACTCACCTTCCTGAAATGGCCTCTAATCATTCCATCTCCTGCTTATCACTGCATAATTGGAGGTACTGCAATTAGGGAACTCTAATTGATCCAACTACGGACAACAACACTGGACTGACGCAGCAGTTTAGCCGAGGCTAATTCTCAGCCGCAGTGTTAGAGAACACTAGATAAATCAACAAGGACAGAACAACACATTTCACTCTGGGACACTTGGAAAAGTGGCTCAAAAGCACACCGTTATTGGCACATTCGCTCGGACCGGCCCACTGGAAAAGCAGGTTGCAGTGAAATATAAGTGTCCAATTATTCACACTGTAAAACAGCTATCTGCTTAGCCAAGCACCTAGGGAAATTCAATAAGTTGTTCCACAGATGAGGCTTGGCTTTTACTGGACACAGATTTTGTGAGCATCAATCACAGAGCCACACAGACGAACTAGTCTGCCGATACAAGAAACCGGACAGACGGAGTAAAATAAATGGCGTGCTCTCTCAGCAGGCCTTAAAACTAAAAGTAAGACGTTGTGGGCCAACCTGGGAtgttttatttgaaaaagaatggcCTCATGCGTGTACTTTTTTGCTCGGGgagcattattgttttttta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006722 lncRNA upstream 25201 24116083 ~ 24151217 (+) True XLOC_003441
TCONS_00006721 lncRNA upstream 92830 24061156 ~ 24083588 (+) False XLOC_003440
TCONS_00006737 lncRNA downstream 161742 24339393 ~ 24340922 (+) False XLOC_003446
TCONS_00008611 lncRNA downstream 161745 24339396 ~ 24344016 (+) False XLOC_003446
TCONS_00006741 lncRNA downstream 162380 24340031 ~ 24343193 (+) False XLOC_003446
TCONS_00006743 lncRNA downstream 165359 24343010 ~ 24344016 (+) False XLOC_003446
TCONS_00006744 lncRNA downstream 165677 24343328 ~ 24344304 (+) False XLOC_003446
TCONS_00006720 mRNA upstream 119809 24046179 ~ 24056609 (+) True XLOC_003439
TCONS_00006717 mRNA upstream 131832 24034345 ~ 24044586 (+) False XLOC_003438
TCONS_00006716 mRNA upstream 144228 24027809 ~ 24032190 (+) True XLOC_003437
TCONS_00006715 mRNA upstream 146707 24027715 ~ 24029711 (+) False XLOC_003437
TCONS_00006713 mRNA upstream 168430 24002503 ~ 24007988 (+) True XLOC_003435
TCONS_00006724 mRNA downstream 73490 24251141 ~ 24299538 (+) False XLOC_003442
TCONS_00006725 mRNA downstream 112479 24290130 ~ 24297701 (+) False XLOC_003442
TCONS_00006726 mRNA downstream 120781 24298432 ~ 24310645 (+) True XLOC_003442
TCONS_00006727 mRNA downstream 136280 24313931 ~ 24331318 (+) False XLOC_003445
TCONS_00006728 mRNA downstream 136343 24313994 ~ 24330192 (+) False XLOC_003445
TCONS_00006700 other upstream 779033 23397270 ~ 23397385 (+) True XLOC_003428
TCONS_00006698 other upstream 1462287 22714015 ~ 22714131 (+) True XLOC_003425
TCONS_00006686 other upstream 2525780 21650522 ~ 21650638 (+) True XLOC_003418
TCONS_00006677 other upstream 3124074 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006668 other upstream 4143233 20033066 ~ 20033185 (+) True XLOC_003402
TCONS_00006723 other downstream 1172 24178823 ~ 24178938 (+) True XLOC_003444
TCONS_00006731 other downstream 161711 24339362 ~ 24345423 (+) False XLOC_003446
TCONS_00006732 other downstream 161723 24339374 ~ 24345421 (+) False XLOC_003446
TCONS_00006735 other downstream 161734 24339385 ~ 24342063 (+) False XLOC_003446
TCONS_00006738 other downstream 161745 24339396 ~ 24340731 (+) False XLOC_003446

Expression Profile

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