RNA id: TU21669


Basic Information

Item Value
RNA id TU21669
length 8167
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G15983
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 9769019 ~ 9805899 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGAAAAACAACATCAAATTCTTTATTATATTCATAGATTTGTCACTGGTTTTATTAGAAGCACTTCCATGCTGATGAGAAGAAAGATACACATACCGAAAAACCCGAATGAGAAAATATTGAGAGAGAAAGttacacagaaagagagactgagagagagagagagagagagcatgcaGTGAGTATCTGTTAGGAAGAGAACGTCAGGTGCTCGTTCTCCAACGTCCGTCAGCTTCCCACACTTTTTAAAACTGGagttactcacacacacacatgaactgTAACTGAGCACAAAGTAACACACTTCAAAACCAAAGAACAAAAAAGTACACTTAGTGAAGTTATCAAAATATAGGCTATATGCTGTATACTCTTAAGACGTGTTAACGTGAAAACAACCAGCGCTGAGTTAGCTTCTATGAGAGTGACTTGGACGTTATATTCTCCGACATATATACGATTATAGAAgattaaaatgacaaaactgGAGATTCTGAACGTTTTAAACTTTCAATTACAAATCACAAATACTTTACATTCCTGCTGATCATTTCTCAAATCATGCACTAGTGTTTGAGAGATTGATTGTAATTCTTAAGTACGCCATTTTACTACTTCGTTTTGACAAAGATGCAAATTTTACGCTGCAGGATTCATGTTTTGATTTACGTAGAAATGTACGGCAACCAAAAAGGCTGCCTGGAAATTAAACTAAAACCATGAGGAAGGCTTTGGAAATAAGTCAGCAGAAAATAAggaccaacccgttctcactccgaactcgtaaaatacggacgtttggacagttGCTGTCAAGCGATGaaaaaagcgcccttcagcgtgtttgtataACTTatcggggagagcagcagctacacagggtttagagtagtatgtaaggccgaAATTCCCCGTAGTAAGGTTGGTTGgggtagcctcgtgagaccgtcctgatctggcgagctccagttttccactcgcagatcagtctggcatcttgagatagagaaccTTTTAGAGCCGTTcaccaaacgaccgaccaatcagcgttggttttgaggcgggtttaggtgtgacacAACGAGaagcgtctatcaccaacataggtagtgatagacagatggtttatccaatcagctaaccaggattttcagacagcggtagccctaattctgttagccgctcgctaatgctttttcctcttggatccttcttttggaatatggaccaggaacctgaaatggggccttttattcctaaattctcgttacacaaacggcaaatatcctttaccgacatgttgctagcttgctgagctaacgagctatgctttgcctgcagcaacaggggtagcctggctcgtggttgtattttcatacgctttgttgatctgattggttgatttggtccGTCTTTCACCAACTATAGggggtgatagacagatggtttatccaatcagctaaccaggattttcgccccttcccaaaagttctcaaACGTTAAGtgcccagatggatatgccgagcaaatgcgaagcgatccatctggtggagtcaggttatgGTTGGGGgtgaggatgggtcaaacacaggactttcacccaggagaccggggatcgtgtcccgcgtggcACGTTTCCTAAAGTCACTTTCTTCTTTAACCATCCCGTtattcccgcgtgtcacggaaacgtaagccAACCCACGACCTAttccttaacataactgcgtcaaaattcaattaaattcaattttatttatattatcaaatcataacaagagttatctcaagacactttacagatagagtaggtctagaccacactctataatttacaaagacccaacaattccagtaattcccccaagagcaagcattcagtgcgtCAAAAGGGACCCCAATAGTTTAGTTAAAGTGCGTTATATGATGCTAAAAGAGACTTGtggcgtcaataacaacgacaaaggcatctgaccaagcgtccgtattttacgagatgggagtgagaatacACATGGGACACAGAGTAGTAAGTTTGTAGAAAGAGCTAAAACAGACAAACCCAGTAAAGTCCtttaaatgtcacaaaataAACTGAATCCGAGACAAACTAAGTTTCCCTCTAAACTAATTTGAGAATGCATTGTGGTAGTAGTATTGGAAAGTATGTTATTTTAATGAGACAAGGTTggaaataattaaatgtaaGTGACACTTAGTGGCCAAAACCAGAGAAAAGCTCCACATTTTACACAGCAGTAAGAACCAACGGAGGCTTCACTGACATATTGACCGTACGGTACGTTTACTGTACAAAGACAAACCTCACCATCACTGTGGTCCACTGACGTCTATGTTCACCTACAGGATGACTCGCTCTGGGGAGCCGAAGCATTCAACAGCGTGCTGCAGCAGAGCATTTTTATAGCAAAAGTGTAAAATTATGAAGAGACACTTGCAGCTTTCAGATACTTAAGTTCATCAGGCTCTTGTTCCGGTTTGGATGGGATGGCAGGGGAAAATAGCAGGAACGTAGGAAGGAAGGAGTTCAAATCTGACTTTCTTAAGAGTTGGGTGAAGTACGACTTGCACCACTTCATTTAGTTACACTTTGATTTCACAGGTGAGAATTGAAAGTTGTGACTAAACTCTGCCGCTGGTCGAGCTAAACTGAGCACCTGATGAGTGTAAACGCTGCAGCTATCGTTGGTATAATGTTGAAGCTTATTCCACGGGCacaaaaagaacaatatttaaCAGCACTGTGCAGGAGCAACCACAAaatacagtgtttcctttagccAAGGCTGACAGAAAGACGCAGCAAACCATTAACAAAGTTCAGTCTGATTGTTCTTTACTGTCGGTCTGAACTCTCTCTGGGGGAGTGAAGAGTGAAGAAAGAAAGTTTCTTAGTGGCCAGATTCTGGAGGCATGGATTTCAGAACTCAAGACCCAATCtggtagcctgggtaaaccttGACGAACTTTCGGCAAATTGGAGATTTTctctgcaagtccgtctggccaagagcccattcaagcccatttccaatgtttccagatcgaggcaccaatcacaaccgctgaggcgggctttacaccaatcacaaccgctgaggagggctctacaccaatcacaaccgatgaggcgggctctacaccaatcacaaccgttgaggagggctttacaccaatcacaaccgttgaggcgggctttacaccaatcacatccattgaggcgggctctacaccaatcacaactgttgaggcgggctttacaccaatcacaaccgttgaggcgggctttacaccaatcacatccattgaggcgggctctacaccaatcacaactgttgaggcgggctttacaccaatcacatccattgaggcgggcttttcacgatgacgatagcgcagtgACGGCAAGCAgctgtttgtttacattcaacatgacggccaccgaagcgcagcaacccgttgatgccgctgtcacccggatcgttggtctgattggttgaaggactatccaattgtgtccagaggcatttgagtggcgtccgttggtgatgcccatttggaaatgggctgtgaatgaagctttcccagacccactctcagttaccaGTTATCAGGTTACCAATCTGGGGATTTTACTCAAATATGTTGAGAAAATGGTTCAGTAGAAATGTGCCAACGgagtaaaacaattaaaactttTACATCCTAAAAACCCAACATTCAGTCATATTAATCACAAGCCATACTTTGCAGGTACAATCCCAGTTTACGTGGATGGAGTTTTTACAGCTCTGGTTCAGATCTTGAAGATCTGCTTGTCCAACAAATAGACAATTCATAATCCTGTTGTTTGAGCTGCATAACAAATCTGTTGACTATGTTTACAAATGTTGACTCATGGTTGTAAACTGAGGCTTTTCACGGGTAAAACATGCAATACATGTTTGTCATTTATAGATTTAGATGGCAAACTTTGCATTGCCACAGTTTGGGCTTATTTGATTTTGGGATTAAAGTTAAAACTGTAGATTCACCTGCTGCccttacattttttaatcaacCAGTCACTAAGGTGTAAATGTGCCTCCGCAGATTGATTTTCGTTAATTTCTCCGACTGAACATTTGCAGTTTGGGGCGTCTGGTCACCGGCAGCCTCGGCCATCGGAGCGCGAGCGTGTTTGTCTCTCCGTTATCAGTGTGAAGAGACATCATCACAGAAACCATGTCCACACAGAGATTGGTACACTGTTTACATATTGCTGTTTTCAGTTACGCACATAACTTCGAGAGAGATTTAACATTACAGTAAGCAAACACACAAAGGTTTCAGATCGcgtcctgtttttgttttgtcttgtcgCAGATGCTCACATTCACCAAAGGGAAGCAAAGTCTTATTTAAGTGGAGAAAGAAGGGATGAGAGAAGAGGggaaagagaagcagagagggGGAACTTTTACAAATAGCTCATCCAgggtttaaatttaaaaacctCGGCATGGAGGCGATGAATGTTTGATGAAGGAACACAGAGCTGTGCTATAAAATATTCAACTCCAAACAGATTTAATGTCGTTTTAAGGTTGTCCTTGACTTTAAATTAAGCTTATTTTCAGAGGCAAGCAGGACGGCAGCAACACAAAGACATGAATATCACATGGCACAGGGATGGAAACACGTTTTTGATTTCAAAGAAGGTCCTCGTTTTGGGTCTGTTAGCACTTTTGGTTAACGACAGATTATGATTGCAGCTCTTCATAAGATTTATATAATATACTTTAACTCTAACTAGGCATACTAATGTTTTTCTATTTGGCAATACACAGATTAATAATGACGGCTGTTCTACGTCGTTCAGTCACTATAATGCCCAACTACAGTACTTCATCTATAAATCACTAAATTATCTGCATCTTTTGTTTCAAAGCGATGCAGCAAGAAGGTaaagtcagctgtttgttgtGAAAGAAATGTCATCTAGCTGTAATAAAATGTTGGCATCcacattaaaggacaattccagcgcaaaatgaacctaggggttaataacatatgtctaccgagtcgactgttctctgggatatgttttcatgctaattgaatgtgtctctagcttaaAACAAGCTAAcgggtggttagctgctaactgctagcttcggggcagagggtaaattgctattttctacaccactaacaaggctcaaaatagcaccacacttccacggtagcataatgagggtccctagatgaaaaaaataaccattgagaactttgtaagtgtacaggcGTTCGTGTTtatgcgggcgccatcttggaaaataGTCATGAGCAGTCGAATCACGAACGCTGTATTTGACCTATGTTACTcattactggttgcacggcgttcgtcgttctattgttttattaaactgtctgtacacttacaaagttctcaatacttcggtttacatgtagggaccctcattatgctaccgttgaagtgtggtgctattttgagccttgttagtggtataaaatagcatTTTACCAAGTGCCCTGACTATTAGCGTTAACAGCTAAACATCGGTTTGCGgcagcttgtttcaagctagagacgcattcgattagcatgaaaacatatcccagagaacggtcgactcggtacacatatgttattaacccctataggttaattttgcgccggaattgtcctttaactacAGAGCAACGTTCCCTGCATGAAGACCAAGAACCGGTTTGTTATCAACGGTTAAATTAAGCCTGTTACATacgaaagataaaaaaatacaaccgACTGTAACACTACGATAAAATACAATGAAGTCAGTGTGATTAACCCTGTTTTCAGTTAGACATCTGAGATTAAAGCATGCAGGTGATACAAGTTCTCCACACAGAGATAGAAATGTTTCtaggattgttttttttagtctCAGGAGAAGTAGTGAGGAAGCAGCAGTCAGATGTGAATCCAACACGACGAACAACTTGATACCTGAAGCATTTTTAACGCATTGAGCATGTGCGCTATCAATTTCACACGtcagcccctttcacacatgcgCTGCAACCCGGAACTTATCTCGACATCACCCGGAGAAGCTGTACATGAGAAACGCAAACGTCAGAATCAGTTCGACCGTACATGGCCTTCACGGCTCATTGTCCGGAGACATCATAGCGAGCGAGTGGCCGTGTTGACGATGCTTCTACCGTGCATCAGGCCGGCACGAAACCGGAAGAAAATATCCAACTGTGAAGAGCAAGAAGTGTGACTTACACAAAGATGGCGATGACAATGTTTAACTGGAGttgtctggatcaacggaagtgcATTTCAAGGATGAAGCCTGAGATTCGCCTtgcgctctctgtgtgtggccGTTCTCAAATGCCCTTCGCTACGGAAAACAACGaacttcgagctagcgagctacatgctgaaaatgtcaagttttgaagaaaatttggatggtgcaatgAGGCGGACCTGGAATGATTTtgaagatttacaaagaatatgtttagggcgtttcctctctacctgggaggttttgggaccgattggtgggattgctgtggacgaagtacacacggagatacactggtaagagccaatgaggtttaaccatttatcagctcatttaaatatctcacgttacTGTGTTGTGTCATCAGTTAACTTCTGTTTATattgagactatttagcagagctaCCGTGGCTgcatccagagcttagcgccgtccaggacgattgtgattggtttaaagaaatgcaaacaacccagagagttttttttctcctatcccagaatgcatctgtggtctAGCCAGACAGGTATGGCAATGCACTACAAATTGTCAGACATATTCAAGGGAACTGCAAGAGACTcggttgtttatgaccaaataacGAAACGGGCTAGGCAGCCGCGGTGTAATCCGCATCATGTCCTGCCCTTTTGTACGCTCTACTCAGGCGCCACCCCTCGCCAAAACCTTAACGGAGCATTTGCAGGAAGTGAGAACGCGGCTGACACGGTGTGCTACATGTGAGAAAGGGAAACTGCGGAAAATTCCCGCACCTGATTCTCCGGACATTGCCCAGAGTTAAAAATCAGGAAAcggcttttattttgtttttggaaaCTGTTACTTGAAATCTCAACGTGACAGAAGTAGCTGATGAACTATCAGATGCATTTTGATTAACGCTACCAGTAATTCTCTGACAACTGTCACGACATCCTAGTTAGATGAATAACGTATACAATCCATTGCGGCATTTGTTTTGGCAAAAGTCATTTTGTCTGTGTTCTATGCAGAATATATTATGAGTATACTGTACGCATACGTTTGTGAGCTGCAATCCACAAGTGAAAACATCAGCATTAATTCCTATTTTTAAGCTAGCTGGTGAGACCCAAATTGAGCAAAAACCAAACACGCAGCGGCACTAAGTGATGTTTTATGTGATTTTTGTTATCCCAAACATAGACAAAGCCGGGACAACAAGATGAAAAAGCTACATGATATGACGTATAGAGGGCTAAAGAAGATATATTGGGATTGCTTTAGTTGAGCTGGATCCTCGGTTTCATTAAAGGAATAAAGGACATTTTGATCAGATACAAGGCACAATAGATGTTGCTATAGAACGGCTAAATTGGAGGGATTTGGGCTGAGAGTACGAGAGAGTAGAGGGACGGGGGTTTCACTACGAGAAGTCTGACTGACGACAGTGAACGTCTGAAGAGACCAAAAGCAAAAGAAgtgagagatgaagagaaagtAGAGCGGAGAGATTGATCTGGTGGAGAAgtagaggaggaaggaggagggcgTGGTTAGGACTGCATCTCAGCACGCAGCATCCACGGAAACCAACAGCAGAACAGCAGcctggaggagaagaagaagaagaaaggaggaggaagaggaggaagaggaggaaggtaaCGGGAGCGAGAAGCACGAGTGTGCAGAAGAACAAGGGGAAGAGGAGTTGGGAGggaaggaaaaagaagaaaggcagaaggatgaggaggaggaggaggagggaacaGTGGTTTTAGATTtggttttaattaaaaatgtctCATAAGTGactgaaaaagcaaagaaatATCACATAAACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21637 lncRNA downstream 19906 9687412 ~ 9777378 (-) True G15966
TU21662 lncRNA downstream 21909 9768905 ~ 9775375 (-) True G15982
TU21566 lncRNA downstream 87152 9680421 ~ 9710132 (-) False LOC120551163
TU21578 lncRNA downstream 141624 9600552 ~ 9655660 (-) True G15933
TU21654 lncRNA upstream 39090 9844989 ~ 9944527 (-) False G15977
TU21657 lncRNA upstream 47149 9853048 ~ 9969138 (-) False G15977
TU21650 lncRNA upstream 60945 9866844 ~ 9895794 (-) False G15977
TU21656 lncRNA upstream 60945 9866844 ~ 9944527 (-) False G15977
TU21653 lncRNA upstream 81723 9887622 ~ 9944527 (-) False G15977
XM_039788379.1 mRNA downstream 116442 9676835 ~ 9680842 (-) True LOC120551163
XM_039777124.1 mRNA downstream 254143 9531021 ~ 9543141 (-) True LOC120543835
XM_039788333.1 mRNA downstream 266189 9524207 ~ 9531095 (-) True LOC120551135
XM_039788319.1 mRNA downstream 275053 9513476 ~ 9522231 (-) True LOC120551129
XM_039777530.1 mRNA downstream 294390 9488322 ~ 9502894 (-) True LOC120544027
XM_039788414.1 mRNA upstream 42099 9847998 ~ 9851668 (-) True dharma
XM_039824593.1 mRNA upstream 347992 10153891 ~ 10178798 (-) False zgc:162698
XM_039824587.1 mRNA upstream 347992 10153891 ~ 10178795 (-) True zgc:162698
XM_039824601.1 mRNA upstream 378634 10184533 ~ 10201584 (-) False LOC120574297
XM_039824600.1 mRNA upstream 378634 10184533 ~ 10201584 (-) True LOC120574297
XR_005638376.1 other downstream 165256 9631923 ~ 9632028 (-) True LOC120554346
TU21571 other downstream 279314 9513504 ~ 9517970 (-) False LOC120551129
TU21567 other downstream 363682 9430861 ~ 9433602 (-) False eif2a
TU21546 other downstream 558500 9237967 ~ 9238784 (-) True G15903
TU21489 other downstream 653164 9131539 ~ 9144120 (-) False LOC120543625
TU21765 other upstream 330789 10136688 ~ 10138347 (-) True G16066
TU21762 other upstream 334277 10140176 ~ 10149571 (-) True G16064
TU21797 other upstream 520354 10326253 ~ 10330847 (-) False LOC120574316
TU21879 other upstream 616163 10422062 ~ 10424770 (-) True G16143
TU22339 other upstream 2143438 11949337 ~ 11955578 (-) True G16407

Expression Profile