RNA id: TU21717


Basic Information

Item Value
RNA id TU21717
length 207
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G16023
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 10122607 ~ 10122813 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCAACCAATGGCACACTAGCCATAAGTGTTTTTATGGAAATATTCCAATCGGCATGCCAAATGCTGTCTTTCACAGCCATTGGAAGGAGCCCAGCCTGTTATTTAAagtagtttgactttttttcccatTCACATCATGCAAAGACCCGTCCTACTcttcctctgattggctagtaatCGTTTCCTTCTTCACAGAAAGCAGGgc

Function

GO:

id name namespace
GO:0004690 cyclic nucleotide-dependent protein kinase activity molecular_function
GO:0004692 cGMP-dependent protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21711 lncRNA downstream 28627 10093573 ~ 10093980 (-) True G16017
TU21698 lncRNA downstream 117885 10004496 ~ 10004722 (-) True G16004
TU21651 lncRNA downstream 153469 9961285 ~ 9969138 (-) False G15977
TU21685 lncRNA downstream 157079 9945324 ~ 9965528 (-) True G15996
TU21720 lncRNA upstream 4095 10126908 ~ 10127408 (-) True G16026
TU21721 lncRNA upstream 6273 10129086 ~ 10129763 (-) True G16027
TU21722 lncRNA upstream 7535 10130348 ~ 10130939 (-) True G16028
TU21723 lncRNA upstream 10055 10132868 ~ 10133140 (-) True G16029
TU21768 lncRNA upstream 61190 10184003 ~ 10184657 (-) False LOC120574297
XM_039788414.1 mRNA downstream 270939 9847998 ~ 9851668 (-) True dharma
XM_039788379.1 mRNA downstream 441765 9676835 ~ 9680842 (-) True LOC120551163
XM_039777124.1 mRNA downstream 579466 9531021 ~ 9543141 (-) True LOC120543835
XM_039788333.1 mRNA downstream 591512 9524207 ~ 9531095 (-) True LOC120551135
XM_039788319.1 mRNA downstream 600376 9513476 ~ 9522231 (-) True LOC120551129
XM_039824593.1 mRNA upstream 31078 10153891 ~ 10178798 (-) False zgc:162698
XM_039824587.1 mRNA upstream 31078 10153891 ~ 10178795 (-) True zgc:162698
XM_039824601.1 mRNA upstream 61720 10184533 ~ 10201584 (-) False LOC120574297
XM_039824600.1 mRNA upstream 61720 10184533 ~ 10201584 (-) True LOC120574297
XM_039788438.1 mRNA upstream 104415 10227228 ~ 10248071 (-) True LOC120551203
XR_005638376.1 other downstream 490579 9631923 ~ 9632028 (-) True LOC120554346
TU21571 other downstream 604637 9513504 ~ 9517970 (-) False LOC120551129
TU21567 other downstream 689005 9430861 ~ 9433602 (-) False eif2a
TU21546 other downstream 883823 9237967 ~ 9238784 (-) True G15903
TU21489 other downstream 978487 9131539 ~ 9144120 (-) False LOC120543625
TU21765 other upstream 13875 10136688 ~ 10138347 (-) True G16066
TU21762 other upstream 17363 10140176 ~ 10149571 (-) True G16064
TU21797 other upstream 203440 10326253 ~ 10330847 (-) False LOC120574316
TU21879 other upstream 299249 10422062 ~ 10424770 (-) True G16143
TU22339 other upstream 1826524 11949337 ~ 11955578 (-) True G16407

Expression Profile