RNA id: TU21725


Basic Information

Item Value
RNA id TU21725
length 224
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G16031
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 10135508 ~ 10135731 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTATAACAGCCCacgtgttaaaaaaagtgtcggtttaaatcgggctcataattacagttaacgtgtcgggccgggccgggctcggacacaacgtgctcGGGCGGGCTTGATTTATTGGGCCGATCTAAGCTCTATACCTTTGGCGTTGtaattgacgctaaaagtctcctttagcgtcctATAACGTGTGTTATCTAAACGCGcgtggtcgggactattggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21314 lncRNA upstream 130779 10004511 ~ 10004729 (+) True G15727
TU21266 lncRNA upstream 132136 9866710 ~ 10003372 (+) False LOC120551195
TU21263 lncRNA upstream 166326 9953462 ~ 9969182 (+) False LOC120551195
TU21300 lncRNA upstream 168904 9965892 ~ 9966604 (+) True G15723
TU21301 lncRNA upstream 168904 9965892 ~ 9966604 (+) False G15723
TU21727 lncRNA downstream 3272 10139003 ~ 10166469 (+) True G16033
TU21739 lncRNA downstream 47962 10183693 ~ 10185685 (+) True G16044
TU21744 lncRNA downstream 53232 10188963 ~ 10195210 (+) True G16048
TU21806 lncRNA downstream 251941 10387672 ~ 10387988 (+) True G16101
TU21809 lncRNA downstream 257689 10393420 ~ 10393970 (+) True G16103
XM_039779289.1 mRNA upstream 15669 10055994 ~ 10119839 (+) True si:ch211-137a8.4
XM_039779298.1 mRNA upstream 15669 10056869 ~ 10119839 (+) False si:ch211-137a8.4
XM_039788424.1 mRNA upstream 159006 9953552 ~ 9976502 (+) True LOC120551195
XM_039780891.1 mRNA upstream 337782 9750631 ~ 9797726 (+) True clip3
XM_039780892.1 mRNA upstream 337782 9750631 ~ 9797726 (+) False clip3
XM_039787317.1 mRNA downstream 223658 10359389 ~ 10376811 (+) True LOC120550666
XM_039787324.1 mRNA downstream 223700 10359431 ~ 10376811 (+) False LOC120550666
XM_039784386.1 mRNA downstream 252501 10388232 ~ 10401550 (+) True zgc:101731
XM_039785453.1 mRNA downstream 269458 10405189 ~ 10424770 (+) True LOC120548947
XM_039782658.1 mRNA downstream 298754 10434485 ~ 10445489 (+) False LOC120547173
TU21270 other upstream 131913 10002250 ~ 10003595 (+) True G15712
TU21264 other upstream 169734 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other upstream 169734 9960066 ~ 9965774 (+) False LOC120551195
TU21262 other upstream 191063 9885613 ~ 9944445 (+) False LOC120551195
unassigned_transcript_87 other upstream 250904 9884513 ~ 9884604 (+) True trnar-ucu_11
XR_005638446.1 other downstream 1420576 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 1421721 11557452 ~ 11557600 (+) True LOC120554442
XR_005638440.1 other downstream 1424660 11560391 ~ 11560539 (+) True LOC120554427
XR_005638430.1 other downstream 1426525 11562256 ~ 11562404 (+) True LOC120554420
TU22150 other downstream 1758773 11894504 ~ 11900873 (+) True G16267

Expression Profile