RNA id: TU21744


Basic Information

Item Value
RNA id TU21744
length 300
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G16048
representative True

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 10188963 ~ 10195210 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gagcaggtgagtcCGGCAGCTTTGCCAGAAGGGCAGGTGTTGCTAGCTGAGCTGTCACAGTCCAGCAGAGAAGACTCATGGCCTCTACACTGGAACTGtttggtccacactggagcctCCATGTCTCCATAGAGTGCCCCCTGGAGGACTGAAGGAGCCCCACATTCAAGCTCCCTGCAGACCACCTCTGCATCCTGCAGGTCAAAGTCatcttcacacactgaggaccacGACTGGGTAGACTGGTTAGACTTCACCTCCAGTCTGCCTGAACACAGACTAGTCCCATTCACCAGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21739 lncRNA upstream 3278 10183693 ~ 10185685 (+) True G16044
TU21727 lncRNA upstream 22494 10139003 ~ 10166469 (+) True G16033
TU21725 lncRNA upstream 53232 10135508 ~ 10135731 (+) True G16031
TU21314 lncRNA upstream 184234 10004511 ~ 10004729 (+) True G15727
TU21309 lncRNA upstream 222359 9965892 ~ 9966604 (+) False G15723
TU21806 lncRNA downstream 192462 10387672 ~ 10387988 (+) True G16101
TU21809 lncRNA downstream 198210 10393420 ~ 10393970 (+) True G16103
TU21811 lncRNA downstream 202911 10398121 ~ 10471329 (+) False zgc:101731
TU21813 lncRNA downstream 274567 10469777 ~ 10505338 (+) False zgc:101731
TU21826 lncRNA downstream 306321 10501531 ~ 10553760 (+) False G16115
XM_039779289.1 mRNA upstream 69124 10055994 ~ 10119839 (+) True si:ch211-137a8.4
XM_039779298.1 mRNA upstream 69124 10056869 ~ 10119839 (+) False si:ch211-137a8.4
XM_039788424.1 mRNA upstream 212461 9953552 ~ 9976502 (+) True LOC120551195
XM_039780891.1 mRNA upstream 391237 9750631 ~ 9797726 (+) True clip3
XM_039787317.1 mRNA downstream 164179 10359389 ~ 10376811 (+) True LOC120550666
XM_039787324.1 mRNA downstream 164221 10359431 ~ 10376811 (+) False LOC120550666
XM_039784386.1 mRNA downstream 193022 10388232 ~ 10401550 (+) True zgc:101731
XM_039785453.1 mRNA downstream 209979 10405189 ~ 10424770 (+) True LOC120548947
XM_039782658.1 mRNA downstream 239275 10434485 ~ 10445489 (+) False LOC120547173
TU21270 other upstream 185368 10002250 ~ 10003595 (+) True G15712
TU21264 other upstream 223189 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other upstream 223189 9960066 ~ 9965774 (+) False LOC120551195
TU21262 other upstream 244518 9885613 ~ 9944445 (+) False LOC120551195
unassigned_transcript_87 other upstream 304359 9884513 ~ 9884604 (+) True trnar-ucu_11
XR_005638446.1 other downstream 1361097 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 1362242 11557452 ~ 11557600 (+) True LOC120554442
XR_005638440.1 other downstream 1365181 11560391 ~ 11560539 (+) True LOC120554427
XR_005638430.1 other downstream 1367046 11562256 ~ 11562404 (+) True LOC120554420
TU22150 other downstream 1699294 11894504 ~ 11900873 (+) True G16267

Expression Profile