RNA id: TU21768


Basic Information

Item Value
RNA id TU21768
length 655
lncRNA type sense_over
GC content 0.35
exon number 1
gene id LOC120574297
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 10184003 ~ 10201584 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTAATACTGATATGGACCTGTGTTTCtgaaataaagttgaattgatatacagtatcaaaaagtaagtgtacagcttgtataacagtgtacatttgctgtcccctcaaaataaataaaatggttttatttcagttagtcTAATAGCTggttttgatttgcattgagagatgatcttatgaaaagtaccccatgccaatatctaggtatggtgaagggtatgtgatgatgtgtggctattttaattccaaaggccaagggtgcatagtatcctggatatcaggatgcatagtatcctggatatcaggatgcatagtatcctggatccatgaaataactggcctttaaaaataaaaatctgcctgcctctatgggaatttaacataggggtgtactgactttttttgccagcggtttagacattaatggctgtgtgttgagttattgaggggacagcacatttacacggttatacaagctgtacacttaatactttacattgtagcaaagtgtaatttcttcagtgttgtcccattaaaagacataatgaaatatttactaaaatgcgaggggtgtactcacttttgtgagatactgtagatTATGTTGTgagaaaaatgtgacattttgttgTATTAATAATCTGCTGAGTGAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21723 lncRNA downstream 50863 10132868 ~ 10133140 (-) True G16029
TU21722 lncRNA downstream 53064 10130348 ~ 10130939 (-) True G16028
TU21721 lncRNA downstream 54240 10129086 ~ 10129763 (-) True G16027
TU21720 lncRNA downstream 56595 10126908 ~ 10127408 (-) True G16026
TU21717 lncRNA downstream 61190 10122607 ~ 10122813 (-) True G16023
TU21780 lncRNA upstream 51841 10236498 ~ 10237527 (-) True G16081
TU21872 lncRNA upstream 168538 10353195 ~ 10376811 (-) True G16136
TU21873 lncRNA upstream 178475 10363132 ~ 10373280 (-) True G16137
TU21880 lncRNA upstream 188911 10373568 ~ 10424770 (-) False G16143
XR_005637037.1 lncRNA upstream 259069 10443726 ~ 10451113 (-) True LOC120547199
XM_039824593.1 mRNA downstream 5205 10153891 ~ 10178798 (-) False zgc:162698
XM_039824587.1 mRNA downstream 5208 10153891 ~ 10178795 (-) True zgc:162698
XM_039788414.1 mRNA downstream 332335 9847998 ~ 9851668 (-) True dharma
XM_039788379.1 mRNA downstream 503161 9676835 ~ 9680842 (-) True LOC120551163
XM_039777124.1 mRNA downstream 640862 9531021 ~ 9543141 (-) True LOC120543835
XM_039788438.1 mRNA upstream 42571 10227228 ~ 10248071 (-) True LOC120551203
XM_039788453.1 mRNA upstream 72954 10257611 ~ 10342658 (-) True LOC120551206
XM_039824619.1 mRNA upstream 134177 10318834 ~ 10330841 (-) False LOC120574316
XM_039824611.1 mRNA upstream 134177 10318834 ~ 10330841 (-) True LOC120574316
XM_039824632.1 mRNA upstream 157725 10342382 ~ 10352839 (-) True LOC120574326
TU21762 other downstream 34432 10140176 ~ 10149571 (-) True G16064
TU21765 other downstream 45656 10136688 ~ 10138347 (-) True G16066
XR_005638376.1 other downstream 551975 9631923 ~ 9632028 (-) True LOC120554346
TU21571 other downstream 666033 9513504 ~ 9517970 (-) False LOC120551129
TU21567 other downstream 750401 9430861 ~ 9433602 (-) False eif2a
TU21797 other upstream 141596 10326253 ~ 10330847 (-) False LOC120574316
TU21879 other upstream 237405 10422062 ~ 10424770 (-) True G16143
TU22339 other upstream 1764680 11949337 ~ 11955578 (-) True G16407
TU22359 other upstream 1804361 11989018 ~ 12033762 (-) True G16422
TU22426 other upstream 2040402 12225059 ~ 12262775 (-) False G16458

Expression Profile