RNA id: TU21847


Basic Information

Item Value
RNA id TU21847
length 284
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G16115
representative False

Chromosome Information

Item Value
chromosome id NC_053113.1
NCBI id CM020910.1
chromosome length 48524041
location 10501531 ~ 10553760 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttcttcttttgctaaacccaactgtcccgttcttctttacctaaacccaactgtcccgttcttctttacctaaacccaactgtcccgttcttcttttcctaaacccaaccgtcccgttcttcttttcttaaacctaaccgtcccgttcttctttacctaaacccaactgtcccgttcttctttacctaaacccaactgtcccgttcttcttttcctaaacccaactgtcccgttcttcttttcctaaacccaactgtcccgttcttcttttcctaaacctaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21813 lncRNA upstream 47315 10469777 ~ 10505338 (+) False zgc:101731
TU21844 lncRNA upstream 50011 10501531 ~ 10502642 (+) False G16115
TU21835 lncRNA upstream 50275 10501531 ~ 10502378 (+) False G16115
TU21811 lncRNA upstream 81324 10398121 ~ 10471329 (+) False zgc:101731
TU21809 lncRNA upstream 158683 10393420 ~ 10393970 (+) True G16103
TU21860 lncRNA downstream 106610 10659853 ~ 10660419 (+) True G16125
TU21936 lncRNA downstream 463132 11016375 ~ 11016658 (+) True G16171
TU21941 lncRNA downstream 638907 11192150 ~ 11192454 (+) True G16176
TU21943 lncRNA downstream 705724 11258967 ~ 11259682 (+) True G16178
TU21945 lncRNA downstream 741604 11294847 ~ 11295519 (+) True G16180
XM_039788464.1 mRNA upstream 88300 10455757 ~ 10464353 (+) True LOC120551211
XM_039782658.1 mRNA upstream 107164 10434485 ~ 10445489 (+) False LOC120547173
XM_039788488.1 mRNA downstream 423962 10977205 ~ 10979429 (+) True LOC120551226
XM_039791660.1 mRNA downstream 982542 11535785 ~ 11540819 (+) True LOC120553334
XM_039786653.1 mRNA downstream 1001409 11554652 ~ 11562928 (+) True rps3
XM_039821761.1 mRNA downstream 1012018 11565261 ~ 11573226 (+) True kctd14
XM_039787137.1 mRNA downstream 1027203 11580446 ~ 11587261 (+) True LOC120550095
TU21270 other upstream 549058 10002250 ~ 10003595 (+) True G15712
TU21264 other upstream 586879 9960066 ~ 9965774 (+) False LOC120551195
TU21267 other upstream 586879 9960066 ~ 9965774 (+) False LOC120551195
TU21262 other upstream 608208 9885613 ~ 9944445 (+) False LOC120551195
unassigned_transcript_87 other upstream 668049 9884513 ~ 9884604 (+) True trnar-ucu_11
XR_005638446.1 other downstream 1003064 11556307 ~ 11556455 (+) True LOC120554434
XR_005638451.1 other downstream 1004209 11557452 ~ 11557600 (+) True LOC120554442
XR_005638440.1 other downstream 1007148 11560391 ~ 11560539 (+) True LOC120554427
XR_005638430.1 other downstream 1009013 11562256 ~ 11562404 (+) True LOC120554420
TU22150 other downstream 1341261 11894504 ~ 11900873 (+) True G16267

Expression Profile